Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10560
         (442 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J03251-1|AAA28714.1|  846|Drosophila melanogaster myospheroid pr...    29   3.7  
AY113499-1|AAM29504.1|  846|Drosophila melanogaster RE55238p pro...    29   3.7  
AE014298-1112|AAF46313.2|  846|Drosophila melanogaster CG1560-PA...    29   3.7  
AF289996-1|AAG02461.1| 1475|Drosophila melanogaster thyroid horm...    27   8.6  
AE014296-3591|AAF51757.2| 1475|Drosophila melanogaster CG7162-PA...    27   8.6  

>J03251-1|AAA28714.1|  846|Drosophila melanogaster myospheroid
           protein protein.
          Length = 846

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 242 TTEICGRQHCVTVDCCCHGSPH 307
           TT+  GR HCV   C CH  P+
Sbjct: 568 TTDCSGRGHCVCGACECHKRPN 589


>AY113499-1|AAM29504.1|  846|Drosophila melanogaster RE55238p
           protein.
          Length = 846

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 242 TTEICGRQHCVTVDCCCHGSPH 307
           TT+  GR HCV   C CH  P+
Sbjct: 568 TTDCSGRGHCVCGACECHKRPN 589


>AE014298-1112|AAF46313.2|  846|Drosophila melanogaster CG1560-PA
           protein.
          Length = 846

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 242 TTEICGRQHCVTVDCCCHGSPH 307
           TT+  GR HCV   C CH  P+
Sbjct: 568 TTDCSGRGHCVCGACECHKRPN 589


>AF289996-1|AAG02461.1| 1475|Drosophila melanogaster thyroid hormone
            receptor-associatedprotein TRAP220 protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 237  SILRKFVAGSIVSQLTAAAMVAPT 308
            S LRK +AG  VS +T+ A +APT
Sbjct: 1064 SALRKGMAGGAVSLMTSTAALAPT 1087


>AE014296-3591|AAF51757.2| 1475|Drosophila melanogaster CG7162-PA
            protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 237  SILRKFVAGSIVSQLTAAAMVAPT 308
            S LRK +AG  VS +T+ A +APT
Sbjct: 1064 SALRKGMAGGAVSLMTSTAALAPT 1087


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,504,471
Number of Sequences: 53049
Number of extensions: 390364
Number of successful extensions: 827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1417837128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)