Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10559X
         (359 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    27   0.077
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   2.9  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    20   8.8  

>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 26.6 bits (56), Expect = 0.077
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 81  RVSHLRC-DLQEHGGYDIADHGHTRPQDWRWKEFES 185
           + S  +C D Q+ G   +  H +   QDW WK+ E+
Sbjct: 71  KTSCAKCTDKQKQGAKTVIQHLYKNKQDW-WKQLEA 105


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 225 AKQHDGMLTESNDLIQILSTSNLEVE 148
           A Q +   T+  D  ++ STSNL+ +
Sbjct: 155 AVQEERQRTKDRDTSEVESTSNLQAD 180


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 172 KNLNQVVGFSEHSVVLLGEKKQTKDSET*EER 267
           K  +Q +G+    VV    +K+  D E  EE+
Sbjct: 201 KKHSQFIGYPIKLVVEKEREKELSDDEAEEEK 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,211
Number of Sequences: 336
Number of extensions: 1233
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)