Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10559X
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    28   0.50 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   3.5  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.7  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   4.7  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   4.7  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    24   6.2  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    24   6.2  
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    24   6.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    24   8.2  

>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.9 bits (59), Expect = 0.50
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 268 SVPLKFQNL*FVSSRQAARRNAH*IQRLD 182
           S+PLK  N  F SSRQ++  N H +  LD
Sbjct: 25  SIPLKVLNKSFRSSRQSSVSNGHGLYSLD 53


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 60   MLPARRNRVSHLRCDLQEHGGYDIADHGHTRPQDWRWKE 176
            +L A  N +S+L  DL  H  + I  +  + PQDW W E
Sbjct: 1341 LLSADPNSLSNLDQDLPNHLQHLIPIY--SLPQDWLWCE 1377


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 65 KHRPIHGSPIAKTKCLIA 12
          K+RP H   +AK +C+IA
Sbjct: 38 KNRPCHNCFVAKRECIIA 55


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +1

Query: 307 APEATFSRRQPS 342
           APEAT+S RQPS
Sbjct: 562 APEATYSLRQPS 573


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 67  LLDAIESAIYDV-IFKNMAVTTSLITATLDLKIGGGKNLNQVVGFSEHS 210
           L   ++ +  DV IF++ AV  S  TAT   +  GG+   + VG ++++
Sbjct: 248 LKHVVDKSKLDVRIFRSEAVVVSCPTATFASRQSGGRLRERCVGDTDNA 296


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 142 ATLDLKIGGGKNLNQVVGFSEHSVVLLGEKKQT--KDSET*EERSRRLT 282
           ATL + + G KNL  +   S   +  +  KK T  + SE  +E ++ +T
Sbjct: 736 ATLLINMSGSKNLKYIHSSSRDLIFEMENKKATGNEQSEKGKENAKTVT 784


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 269 ERSSQVSESLVCFFSPSSTTE 207
           ++S + ++S + F+ PSSTTE
Sbjct: 615 KKSDKNTQSTLLFYDPSSTTE 635


>SPAC24H6.02c |||TIM23 translocase complex subunit
           Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 132 RCRNRHVLEDHI 97
           +C+NRH++ DH+
Sbjct: 109 KCKNRHLMADHL 120


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 73  DAIESAIYDVIFKNMAVTTSLITATLDLKIGGGKN 177
           D +E+A YD     + V+ ++I    D++   GKN
Sbjct: 427 DGLENASYDATKPIIPVSYTIIDKVWDVQYRSGKN 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,427
Number of Sequences: 5004
Number of extensions: 23227
Number of successful extensions: 63
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)