Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10559X
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0064 - 13053642-13053791,13053845-13053915,13054123-130542...    27   4.4  
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320...    27   4.4  
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375...    27   5.9  
08_01_0366 + 3236615-3236917                                           26   7.7  
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    26   7.7  

>11_04_0064 -
           13053642-13053791,13053845-13053915,13054123-13054227,
           13054269-13054275,13054614-13054906,13055064-13055142,
           13055322-13055551,13055646-13055792,13055988-13056067,
           13056318-13056651,13057155-13057227,13057727-13057750,
           13058297-13058497
          Length = 597

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 202 EHSVVLLGEKKQTKDSET*EERSRRLT 282
           E  VVLLG+++  +D ET  E SR +T
Sbjct: 440 ETDVVLLGDQRNPRDKETQAEDSRIVT 466


>01_01_0424 +
           3200223-3200634,3200677-3200836,3200987-3201342,
           3201958-3203252
          Length = 740

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 197 SVSIPSCCLARRNKLKILKLERN 265
           S SIPSC     N LK+L L++N
Sbjct: 388 SGSIPSCLFEDANALKVLNLKQN 410


>05_01_0471 -
           3751497-3751522,3751760-3751800,3752466-3752507,
           3753249-3753310,3753398-3753584,3753692-3753826,
           3753872-3753948,3754005-3754076,3754389-3754588,
           3754675-3755020,3755463-3755519,3755655-3757433,
           3757539-3757720,3757943-3758072
          Length = 1111

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 129 CRNRHVLEDHIVNG*LDCVEQEASSDTRFTNS 34
           C  +HV E+  +N  L C +Q    +T+F  S
Sbjct: 577 CPEQHVPEETQINAGLSCPDQHLPEETKFNVS 608


>08_01_0366 + 3236615-3236917
          Length = 100

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 141 RDQRCRNRHVLEDHIVNG*LDCVEQEASSDTRFTNSE 31
           R +RCR RH  +D +V+G     + EA+ + R+  S+
Sbjct: 36  RHRRCRRRHDDDDQLVDG-----DGEAAGEERYKESK 67


>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 79  IESAIYDVIFKNM-AVTTSLITATLDLKIGGGKNLNQVVGFSEHSVVLLGEKKQT 240
           IES+  D IFKN   +   L    LD  I  G+N    VG     +    EK QT
Sbjct: 510 IESSRLDYIFKNQKEIRADLYQGLLD-SIHAGENRGNAVGKRMEEITRELEKGQT 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,044,493
Number of Sequences: 37544
Number of extensions: 161529
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)