Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10559X
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03)                    27   6.1  
SB_38618| Best HMM Match : PhdYeFM (HMM E-Value=3.1)                   26   8.0  

>SB_56948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 51  YRTMLPARRNRVSHLRC 101
           Y+TM+  +RNR+SH+ C
Sbjct: 141 YKTMISGQRNRISHIAC 157


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 27  GLRYW*TVYRTMLPARRNRVSHLRCD 104
           G RYW T YR++         H RCD
Sbjct: 420 GRRYWRTCYRSLEHGWNGTTFHRRCD 445


>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 73  DAIESAIYDVIFKNMAVTTSLITATLDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDSE 252
           D +E  +YD +       +S++     LKI  GK      G  + S V L E K  + S+
Sbjct: 689 DILELGLYDAVCHFNLGYSSVLRLLEALKIPAGKYTEAGCGLEDTSRVRLAEYKSKEASK 748

Query: 253 T 255
           T
Sbjct: 749 T 749


>SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03)
          Length = 407

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 147 CGRDQRCRNRHVLEDHIVNG*LDCVEQEASSDTRFTNSED 28
           CG   R RN+ VLE  +     D +  E + D + T + D
Sbjct: 353 CGPATRTRNQEVLEKFVERPNCDNLPMECTGDPKQTQTRD 392


>SB_38618| Best HMM Match : PhdYeFM (HMM E-Value=3.1)
          Length = 370

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 221 LARRNKLKILKLERNAPED*RFMRELC*RHRRLR 322
           + RR +L+ L+  RN     R MR+L  R+RRL+
Sbjct: 136 MRRRARLRRLRFMRNLRRIQRRMRQLAARNRRLK 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,277,911
Number of Sequences: 59808
Number of extensions: 180096
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)