Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10559X
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   1.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   4.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              20   7.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    20   7.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 52  IGRCFLLDAIESAIYDVIFKNMAVTTSLITATLDLKIGGGKNLNQVVGFS 201
           IG+ FL+  ++S +   I  N    TSL+  +LD K    ++ + ++G+S
Sbjct: 353 IGQVFLITILDSKVSARIEMNEDDNTSLV--SLDKKQYTWRHTSVLIGWS 400


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 196 FSEHSVVLLGE 228
           FSEH  V+LGE
Sbjct: 210 FSEHDSVMLGE 220


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 26 WSSLLVNRVSDDASCSTQSSQ 88
          +S+  + +V+DD +C T  S+
Sbjct: 22 YSNETIAQVTDDENCETLQSE 42


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
          protein precursor protein.
          Length = 145

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 26 WSSLLVNRVSDDASCSTQSSQ 88
          +S+  + +V+DD +C T  S+
Sbjct: 22 YSNETIAQVTDDENCETLQSE 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,651
Number of Sequences: 438
Number of extensions: 1401
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)