Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10559X
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to...    29   0.93 
At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR...    29   1.2  
At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containi...    27   5.0  
At1g19010.2 68414.m02366 expressed protein                             26   6.6  
At1g19010.1 68414.m02365 expressed protein                             26   6.6  
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    26   8.7  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    26   8.7  

>At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to
           acyl CoA reductase [Simmondsia chinensis] GI:5020215;
           contains Pfam profile PF03015: Male sterility protein
          Length = 402

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = +1

Query: 16  IKHLVFAIGEPCIGRCFLLDAIESAIYDVIFKNMAVTTSLITATLDLKIGGGKNLNQVVG 195
           +  ++ A G+  + +CFL+D   +++ D+I  +M V  ++ITA      G G ++   VG
Sbjct: 284 VDSVIIAYGKGVL-KCFLVDV--NSVCDMIPVDM-VANAMITAAAKHAGGSGVHMVYHVG 339

Query: 196 FSEHSVVLLGE 228
            S  + V  GE
Sbjct: 340 SSHQNPVTFGE 350


>At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 780

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 72  RRNRVSHLRCDLQEHGGYDIADHGHTRPQDWRWKEFESSRW 194
           RRN +SHL  +LQ H G D    G  +     W E + + W
Sbjct: 28  RRNFLSHLHKELQ-HNGIDAFKDGGIKRSRSIWPELKQAIW 67


>At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containing
           protein 
          Length = 972

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 213 DGMLTESNDLIQILSTSNLEVECGRDQR 130
           +G L ES+DL+  LS  NL    G D+R
Sbjct: 306 NGGLNESSDLVNALSGMNLSGSGGLDER 333


>At1g19010.2 68414.m02366 expressed protein
          Length = 290

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 132 RCRNRHVLEDHIVNG*LDCVEQEASSDTR 46
           RCR   V+E + +NG  DC + E+ ++ R
Sbjct: 153 RCREAEVVERNTING--DCADVESLTEAR 179


>At1g19010.1 68414.m02365 expressed protein
          Length = 319

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 132 RCRNRHVLEDHIVNG*LDCVEQEASSDTR 46
           RCR   V+E + +NG  DC + E+ ++ R
Sbjct: 182 RCREAEVVERNTING--DCADVESLTEAR 208


>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 37  IGEPCIGRCFLLDAIESAIYDVIFKNMAVTTSLITAT 147
           I EPC+G  F  +    + YD   + +  T+ L+  T
Sbjct: 46  IAEPCVGMEFNSEKEAKSFYDEYSRQLGFTSKLLPRT 82


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 37  IGEPCIGRCFLLDAIESAIYDVIFKNMAVTTSLITAT 147
           I EPC+G  F  +    + YD   + +  T+ L+  T
Sbjct: 46  IAEPCVGMEFNSEKEAKSFYDEYSRQLGFTSKLLPRT 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,171,160
Number of Sequences: 28952
Number of extensions: 125483
Number of successful extensions: 325
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)