Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10558
         (610 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P35606 Cluster: Coatomer subunit beta'; n=66; Eukaryota...    41   0.020
UniRef50_Q54YD8 Cluster: Putative uncharacterized protein; n=1; ...    39   0.11 
UniRef50_Q7RJN5 Cluster: Cell cycle control protein cwf2; n=1; P...    34   2.3  
UniRef50_A7TSW5 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_Q3WDU4 Cluster: Amino acid adenylation; n=1; Frankia sp...    33   5.3  
UniRef50_A7JV08 Cluster: Hypothetical bacteriophage protein; n=1...    33   5.3  
UniRef50_Q57ZN7 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  
UniRef50_Q1NFK4 Cluster: Cytochrome B561; n=1; Sphingomonas sp. ...    32   9.3  
UniRef50_Q6Z755 Cluster: Putative uncharacterized protein P0487D...    32   9.3  

>UniRef50_P35606 Cluster: Coatomer subunit beta'; n=66;
           Eukaryota|Rep: Coatomer subunit beta' - Homo sapiens
           (Human)
          Length = 906

 Score = 41.1 bits (92), Expect = 0.020
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +3

Query: 3   ESVGATNKKSGQSLADPVNYENLFPEYNESLELEYFQRE 119
           E++   N+K+ +SLADP  YENLFP   E+  +E + +E
Sbjct: 775 ENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKE 813


>UniRef50_Q54YD8 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1005

 Score = 38.7 bits (86), Expect = 0.11
 Identities = 15/38 (39%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = +3

Query: 3   ESVGATNKKSGQSLADPVNYENLFPEYNESLELE-YFQ 113
           ES+ +T+ K+  +L++P+++ NLFP+Y+ S++ E YF+
Sbjct: 778 ESLKSTSSKASDALSNPIDFPNLFPQYDLSIKAEKYFE 815


>UniRef50_Q7RJN5 Cluster: Cell cycle control protein cwf2; n=1;
           Plasmodium yoelii yoelii|Rep: Cell cycle control protein
           cwf2 - Plasmodium yoelii yoelii
          Length = 710

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 23/94 (24%), Positives = 42/94 (44%)
 Frame = +3

Query: 6   SVGATNKKSGQSLADPVNYENLFPEYNESLELEYFQREFGYEQSTAMEAVEPNSKITNTE 185
           ++ +TN  +G + A+P  Y +     N+++   + Q  +G  Q+    +      +TN  
Sbjct: 597 AINSTNFYNGMNNANPYFYNS-----NKAITSTWPQNPYGASQNPYGTSQNSYGALTNPN 651

Query: 186 RDIAAEYAEAKRRGPLNIPPLLNTIKYKILKGTA 287
               + Y      GP N PP   T K K++ G+A
Sbjct: 652 YYDQSNYLSNPIIGPANFPPNFTTNKGKVVTGSA 685


>UniRef50_A7TSW5 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 843

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +3

Query: 162 NSKITNTERDIA-AEYAEAKRR-GPLNIPPLLNTIKYKILKGTAERMRQMGTRRAKVNRN 335
           NS+    ++ +A A + + + R  PL   PLLN++ +K +   +          + +  N
Sbjct: 254 NSETITVQKQVALATWRDWRYRYDPLYSSPLLNSLNWKKVSSHSSSNSIATLSNSSIGNN 313

Query: 336 VKFQSTSWRR*NGNSVKSNSKTTSIT 413
               ST+    + N ++SNS T+SIT
Sbjct: 314 NSSSSTNSSVFSSNRLRSNSSTSSIT 339


>UniRef50_Q3WDU4 Cluster: Amino acid adenylation; n=1; Frankia sp.
           EAN1pec|Rep: Amino acid adenylation - Frankia sp.
           EAN1pec
          Length = 1625

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 201 PRRCLVPYS*SLNSARRPPWRCS--VRNRIRVGSIRALTIHCIPETDSHS*PGRLTTDRI 28
           P R   P + S +  R PP RCS     R    S R  +  C+P + + +  G   TDR 
Sbjct: 50  PTRSPTPTASSWSCPREPPRRCSPPFPRRREPTSPRCCSPRCVPPSPAGAASG-AGTDRP 108

Query: 27  SCSW 16
           +CSW
Sbjct: 109 TCSW 112


>UniRef50_A7JV08 Cluster: Hypothetical bacteriophage protein; n=1;
           Mannheimia haemolytica PHL213|Rep: Hypothetical
           bacteriophage protein - Mannheimia haemolytica PHL213
          Length = 484

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +3

Query: 105 YFQREFGYEQ-STAMEAVEPNSKITNTERDIAAEYAEAKRRGPLNIP-PLLNTIKYK 269
           YF+RE+G+E     ++AVE   K  NT      E++E +RR  + +P P+L  ++++
Sbjct: 363 YFEREYGFEAGDIEVQAVEKAEKSANT-----TEFSEGQRRTQVPMPVPILEQLEHE 414


>UniRef50_Q57ZN7 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 871

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +2

Query: 188 RHRRGIR*SETTRAPQHTAATQYNQIQDSEGDSREDATNGNTTSESQQKRK 340
           +HRR    S   RA Q   AT  N+   + G+S   ATNG+ T   ++KRK
Sbjct: 43  QHRRTFHKSGVVRAKQPRGATTGNEGDTANGNSAA-ATNGDETQLRKKKRK 92


>UniRef50_Q1NFK4 Cluster: Cytochrome B561; n=1; Sphingomonas sp.
           SKA58|Rep: Cytochrome B561 - Sphingomonas sp. SKA58
          Length = 242

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 137 HRHGGRRAEFKDHEYGTRH-RRGIR*SETTRAPQHTAATQYNQIQ 268
           +RH GR   F+ HE   RH  + I+     R P  TAA +YN +Q
Sbjct: 109 NRHVGRDLAFRRHELAPRHIWQDIKDHARLRFPTGTAALRYNVLQ 153


>UniRef50_Q6Z755 Cluster: Putative uncharacterized protein
           P0487D09.6; n=2; Oryza sativa|Rep: Putative
           uncharacterized protein P0487D09.6 - Oryza sativa subsp.
           japonica (Rice)
          Length = 597

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +2

Query: 113 TRIRLRTEHRHGGRRAEFKDHEYGTRHRRGIR----*SETTRAPQHTAATQYNQIQDSEG 280
           T+ R R     GG     +D E GTR RR +R     + + RAP      Q +     + 
Sbjct: 216 TQRRRRLRAGRGGGNDCARDSEAGTRRRRRLRAGCGCAVSHRAPPGGERQQQHDSDSDDT 275

Query: 281 DSREDATNGNTTSESQQKRK 340
           D  ED   G+  S S ++ K
Sbjct: 276 DDDEDEEEGSEASSSGEEEK 295


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 458,779,595
Number of Sequences: 1657284
Number of extensions: 7719557
Number of successful extensions: 23349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23323
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)