Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10558
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    31   0.17 
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    29   0.70 
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    28   0.93 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   2.8  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +3

Query: 57  NYENLFPEYNESLELEYFQREFGYEQSTAMEAVEPNSKITNTERDIAAEYAEAKRRGPLN 236
           N+EN   E +E+   E    E  + ++T  E  E +  +  T     + + EA   G LN
Sbjct: 96  NFENQENEADEAENEETSYSEQNHTENTE-EIAEESRPLERTHS--GSNHHEASSTGHLN 152

Query: 237 IPPLLNTI 260
           +PPL NT+
Sbjct: 153 LPPLENTL 160


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 24  KKSGQSLADPVNYENLFPEYNESLELEYFQREFGYEQSTAMEAVEPNSK 170
           ++S +S+++     +   +Y E  E E  + E GY  S A E VE  SK
Sbjct: 162 ERSARSVSERTRKRSPVSDYEEQNESEKSEEEEGYSPSYAEEKVEQVSK 210


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +2

Query: 146 GGRRAE-FKDHEYGTRHRRGIR*SETTRAPQHTAATQYNQIQDSEGDSRED 295
           GG R+  F    +G  H R       T APQHT  T      + + D  ++
Sbjct: 80  GGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTILTPRLSATEGKDDDEDE 130


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 257 NQIQDSEGDSREDATNGNTTSESQQKRKISIDIMXXXXXXXXXXXXXNHVDNDDLSD 427
           +Q  DS   +   A+NG+ T  S Q   + IDI              N  + D+++D
Sbjct: 536 SQSTDSLSKNDTTASNGSMTPSSSQNNSVIIDIPRSHFDNAGEVCLENLAEPDEIAD 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,781
Number of Sequences: 5004
Number of extensions: 32478
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)