Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10558
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 32 0.41
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 31 0.54
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 31 0.54
12_02_1173 + 26692030-26692379,26692478-26692565,26693309-266934... 30 1.2
12_02_1172 + 26680246-26680595,26680693-26680780,26681478-266816... 30 1.2
04_04_0047 + 22346962-22347437,22347874-22348036,22348143-223482... 29 2.2
03_02_0052 + 5285061-5285106,5285711-5285754,5286317-5286539,528... 29 2.9
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 27 8.8
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 21 NKKSGQSLADPVNYENLFPEYNESLELE 104
N K+ +SLADP Y NLF ++ +L +E
Sbjct: 777 NPKAAESLADPSEYPNLFEDWQVALTVE 804
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 21 NKKSGQSLADPVNYENLFPEYNESLELE 104
N K+ +SLADP Y NLF ++ +L +E
Sbjct: 687 NPKAAESLADPDEYPNLFEDWQIALNVE 714
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 21 NKKSGQSLADPVNYENLFPEYNESLELE 104
N K+ +SLADP Y NLF ++ +L +E
Sbjct: 682 NPKAAESLADPNEYPNLFEDWQIALNVE 709
>12_02_1173 +
26692030-26692379,26692478-26692565,26693309-26693436,
26693514-26693705,26693810-26694012,26694127-26694290,
26694419-26694499,26694592-26694758,26694839-26694944,
26695097-26695347,26695388-26695508,26695594-26695722,
26695813-26696181
Length = 782
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 159 PNSKITNTERDIAAEYAEAKRRGPLNIPPLLNTIKYKILKGTAE 290
PN+K + + EY EAK G +P L+ + Y +L A+
Sbjct: 126 PNTKFSYSSHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKPAK 169
>12_02_1172 +
26680246-26680595,26680693-26680780,26681478-26681605,
26681683-26681874,26681979-26682181,26682296-26682459,
26682597-26682677,26682770-26682936,26683015-26683120,
26683269-26683519,26683610-26683682,26683751-26683879,
26683963-26684331
Length = 766
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 159 PNSKITNTERDIAAEYAEAKRRGPLNIPPLLNTIKYKILKGTAE 290
PN+K + + EY EAK G +P L+ + Y +L A+
Sbjct: 126 PNTKFSYSSHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKPAK 169
>04_04_0047 +
22346962-22347437,22347874-22348036,22348143-22348217,
22348302-22348402,22348488-22348603,22348693-22348904,
22349033-22349124,22349319-22349433,22349654-22349757,
22349881-22349926,22350007-22350071,22350192-22350272,
22350356-22350410,22350623-22350711,22350802-22350889,
22351011-22351091
Length = 652
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 141 AMEAVEPNSKITNTERDIAAEYAEAKRRGPLNIPPLLNTIKYKILKGTAERMRQMGTRRA 320
A+ A ++ ERD++A E K RGP+ + + + G A+++ G
Sbjct: 86 ALAAKRKGFEVVVLERDMSAVRGEGKYRGPIQLQSNALAVLEAVDAGAADQVMDAGCITG 145
Query: 321 -KVNRNVKFQSTSW 359
+VN V S SW
Sbjct: 146 NRVNGIVDGVSGSW 159
>03_02_0052 +
5285061-5285106,5285711-5285754,5286317-5286539,
5286664-5286827,5286918-5288144
Length = 567
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 84 NESLELEYFQREFGYEQSTAMEA 152
NE+L +F+R FG++ STA A
Sbjct: 338 NENLHFSFFERRFGWDASTAFYA 360
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 27 KSGQSLADPVNY-ENLFPEYNESLELEYFQREFGYEQST 140
K+ + DP N +N PE+N SL + EFG ST
Sbjct: 164 KNSYVVFDPQNILDNKVPEFNRSLVFRIKETEFGTNLST 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,704
Number of Sequences: 37544
Number of extensions: 206094
Number of successful extensions: 590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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