Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10558
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 53 2e-07
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 31 0.55
SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_32049| Best HMM Match : RVT_1 (HMM E-Value=6.7e-15) 29 2.9
SB_15380| Best HMM Match : RA (HMM E-Value=0.11) 29 2.9
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_41691| Best HMM Match : CstA (HMM E-Value=0.62) 28 5.1
SB_57751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 28 6.8
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/78 (37%), Positives = 41/78 (52%)
Frame = +3
Query: 3 ESVGATNKKSGQSLADPVNYENLFPEYNESLELEYFQREFGYEQSTAMEAVEPNSKITNT 182
E + NKK+ SLADP YENLFPE+ E++ E F + +++ A E N
Sbjct: 672 EDLQKVNKKAADSLADPSEYENLFPEFQEAVMAEKFLK---HDRIKLRPAAEYKHLPNNA 728
Query: 183 ERDIAAEYAEAKRRGPLN 236
+RD+ E AK G L+
Sbjct: 729 DRDVFEEMRAAKESGTLD 746
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 31.5 bits (68), Expect = 0.55
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 167 KDHEYGTRHRRGIR*SET-TRAPQHTAATQYNQIQDSEGDSREDATNGNTTSESQQKRKI 343
+DH T R +R T + + + A + + EG+ D NGN T ESQ
Sbjct: 940 QDHHNQTLAREDLRRENTYSGSDGGSVARDEGHLAEKEGEGEADRRNGNQTVESQACAPS 999
Query: 344 SID 352
S+D
Sbjct: 1000 SVD 1002
>SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 92 VRARILPTRIRLRTEHRHGGRRAEFKDHEYG-TRHRR 199
+R ++P + LR H H RR ++ +G RHRR
Sbjct: 545 IRYGVMPRHVELRDRHEHDARRRFHGNNGWGPLRHRR 581
>SB_32049| Best HMM Match : RVT_1 (HMM E-Value=6.7e-15)
Length = 716
Score = 29.1 bits (62), Expect = 2.9
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Frame = +3
Query: 108 FQREFGYEQSTAMEAVEPNSKITNTERDIAAEYAEAK---RRGPLNIPPLLNTIKYKILK 278
FQ F Q E +E +S N I EY E +RG + L + +
Sbjct: 82 FQDRFAIHQKYFEELIEEHSVFRNLLFSIKMEYEECIDTIQRGQRELSFLSQKLAQAV-- 139
Query: 279 GTAERMRQMGTRRAKVNRNV------KFQSTSWRR*NGNSVKSNSKTTSITMTSR 425
G +R RR + + + K S R NS S S+TTS+ TSR
Sbjct: 140 GAIPTLRNYVARREDLEKKIRVLEEEKVSSQDLSRSQSNS--STSRTTSVVSTSR 192
>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
Length = 2124
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Frame = +3
Query: 48 DPVNYENLFPEYNESLELEYFQREFGYEQSTAMEAVEPNSKITNTER----DIAAEYAEA 215
DPV + L+ + + ++ YF + Y+ + A+ K T R I A E
Sbjct: 406 DPVAFNYLYDQISNNIVEGYFDTDLKYDMVIKLAALHMQQKATEATRTLPLKITARGVEK 465
Query: 216 KRRGPLNIPP--LLNTIKYKILKGTAER 293
+ G P LLN +K K L+ E+
Sbjct: 466 EFDGLETFVPENLLNGVKTKELRKALEQ 493
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 117 EFGYEQSTAMEAVEPNSKITNTERDIAAEYAEAKRRGPLNIPPLL-----NTIKYKILKG 281
+F YE MEA KI + + D +Y EA+R+ L L+ +T ++K ++G
Sbjct: 1300 DFSYEADAMMEA----RKIDDDDDDDDYDY-EARRKRRLKNQRLIEIKVADTSEWKTVRG 1354
Query: 282 TAERMRQMGTRRAKVNRN 335
R R G R ++N N
Sbjct: 1355 KNSRKRHDGAVRKRMNSN 1372
>SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)
Length = 406
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 510 KTINCNLKRRQQNKKRMYFIKC*YSL 587
K +N N ++ K YF+ C YSL
Sbjct: 306 KAVNTNTNKKHYGKASFYFVNCFYSL 331
>SB_57751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 193 SPRNTLKRNDEGPSTYRRYSIQSNTRF*RGQQRGCDKWEHDE 318
SP +T K+ E +R + Q+ + RG+ R KWE +
Sbjct: 240 SPSSTFKKLKEREYFHRTKAFQNYEKLCRGEVRSLTKWEQGQ 281
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 122 RLRTEHRHGGRRAEFKDHEYGTRHR 196
R R HRH R HEY RHR
Sbjct: 328 RHRHRHRHRHRHHHHHHHEYNRRHR 352
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,423,433
Number of Sequences: 59808
Number of extensions: 243418
Number of successful extensions: 783
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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