Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10558
(610 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 48 7e-06
Z50794-4|CAC35819.1| 396|Caenorhabditis elegans Hypothetical pr... 29 2.6
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 28 6.0
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp... 28 6.0
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical... 28 6.0
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 28 6.0
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 27 7.9
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 27 7.9
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 27 7.9
AF039047-6|AAB94226.1| 186|Caenorhabditis elegans Hypothetical ... 27 7.9
AF003151-20|AAK18920.2| 251|Caenorhabditis elegans Hypothetical... 27 7.9
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 47.6 bits (108), Expect = 7e-06
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = +3
Query: 18 TNKKSGQSLADPVNYENLFPEYNESLELEYFQREFGYEQSTAMEAVEPNSKITNTERDI 194
+++K G+SLADPV YENLFP + +SL+ E F RE A V P++ N + ++
Sbjct: 783 SSRKIGESLADPVKYENLFPGFTQSLKAESFVREISKIPVPASVRV-PSAATRNIQEEL 840
>Z50794-4|CAC35819.1| 396|Caenorhabditis elegans Hypothetical
protein F59F5.8 protein.
Length = 396
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/75 (28%), Positives = 28/75 (37%)
Frame = +3
Query: 204 YAEAKRRGPLNIPPLLNTIKYKILKGTAERMRQMGTRRAKVNRNVKFQSTSWRR*NGNSV 383
Y A R PL +I +I + R T K +F +SWR
Sbjct: 139 YCAAFMRNPLRASSFFKSIWNQIETEVLQINRHSATPTQKPRSESRFSISSWRSALSTMS 198
Query: 384 KSNSKTTSITMTSRT 428
S+S T ITM +T
Sbjct: 199 LSSSVFTRITMDDKT 213
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 221 TRAPQHTAATQYNQIQDSEGDSREDATNGNTTSESQQKRK 340
TR PQH I +S G S ++ NT ++ + KRK
Sbjct: 2 TRKPQHPGRNGVVDIHESAGTSICSSSADNTVTKEKAKRK 41
>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1045
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 221 TRAPQHTAATQYNQIQDSEGDSREDATNGNTTSESQQKRK 340
TR PQH I +S G S ++ NT ++ + KRK
Sbjct: 2 TRKPQHPGRNGVVDIHESAGTSICSSSADNTVTKEKAKRK 41
>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
protein Y105E8A.12b protein.
Length = 1045
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 221 TRAPQHTAATQYNQIQDSEGDSREDATNGNTTSESQQKRK 340
TR PQH I +S G S ++ NT ++ + KRK
Sbjct: 2 TRKPQHPGRNGVVDIHESAGTSICSSSADNTVTKEKAKRK 41
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 221 TRAPQHTAATQYNQIQDSEGDSREDATNGNTTSESQQKRK 340
TR PQH I +S G S ++ NT ++ + KRK
Sbjct: 2 TRKPQHPGRNGVVDIHESAGTSICSSSADNTVTKEKAKRK 41
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 226 PRRFASAYSAAMSRSVFVIFEFGSTASMAVLCS*PNSRWKYSSSNDSLYSGNR 68
P R A+ S ++ F ++S +C PNS Y+ NDSLYS R
Sbjct: 46 PHRVATRNSTVRQVPLYQ-FLTSRSSSFKAMCK-PNSVLVYTGGNDSLYSDIR 96
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 226 PRRFASAYSAAMSRSVFVIFEFGSTASMAVLCS*PNSRWKYSSSNDSLYSGNR 68
P R A+ S ++ F ++S +C PNS Y+ NDSLYS R
Sbjct: 465 PHRVATRNSTVRQVPLYQ-FLTSRSSSFKAMCK-PNSVLVYTGGNDSLYSDIR 515
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 226 PRRFASAYSAAMSRSVFVIFEFGSTASMAVLCS*PNSRWKYSSSNDSLYSGNR 68
P R A+ S ++ F ++S +C PNS Y+ NDSLYS R
Sbjct: 46 PHRVATRNSTVRQVPLYQ-FLTSRSSSFKAMCK-PNSVLVYTGGNDSLYSDIR 96
>AF039047-6|AAB94226.1| 186|Caenorhabditis elegans Hypothetical
protein K11D12.6 protein.
Length = 186
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 280 GQQRGCDKWEHDERKSTET*NFNRHHGGDRTGI 378
G + C K EHDE+ + N+ HHG + G+
Sbjct: 91 GGAKNCGKEEHDEKCAEPNKNY-CHHGPNNNGV 122
>AF003151-20|AAK18920.2| 251|Caenorhabditis elegans Hypothetical
protein D1007.16 protein.
Length = 251
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 269 DSEGDSREDATNGNTTSESQQKRKISIDIM 358
DS+G S D +NG+++ + + KI ++ M
Sbjct: 165 DSDGSSDSDKSNGDSSDDEDESEKILLEEM 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,666,528
Number of Sequences: 27780
Number of extensions: 180165
Number of successful extensions: 556
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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