Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10558
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   4.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.1  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 18  TNKKSGQSLADPVNYENLFPEYNESLELEYFQREFGYEQSTAMEAVEPNSKITNTER 188
           +N  S +S   P   E+L   +NE +E     +   +  S        +S+I  TE+
Sbjct: 626 SNTTSMESFKPPTLTESLLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEK 682


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +3

Query: 30  SGQSLADPVNYENLFPEYNESLELEYFQREF 122
           +  SL++  NY N +  YN +    Y + ++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNNNYNTNYKKLQY 114


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 554 LFVLLSSFKITIYSFII 504
           LF+LL    + +Y+FI+
Sbjct: 89  LFILLVQIAVAVYAFIV 105


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 363 R*NGNSVKSNSKTTSI 410
           R NGN++ SNS + S+
Sbjct: 30  RGNGNAIVSNSASNSV 45


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 363 R*NGNSVKSNSKTTSI 410
           R NGN++ SNS + S+
Sbjct: 31  RGNGNAIVSNSASNSV 46


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 545 LLSSFKITIYSFIIN*K*NIKQE 477
           L ++FK  IY F +N    IK E
Sbjct: 526 LANTFKAIIYGFNVNATKQIKDE 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,142
Number of Sequences: 438
Number of extensions: 2341
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)