Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10558
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 36 0.016
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 36 0.016
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 36 0.016
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 33 0.11
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 33 0.20
At4g01120.1 68417.m00150 G-box binding factor 2 (GBF2) identical... 30 1.4
At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein... 30 1.4
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR... 29 2.4
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 28 4.2
At3g05860.1 68416.m00658 MADS-box protein (AGL45) similar to MAD... 28 5.6
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 28 5.6
At5g61150.2 68418.m07672 leo1-like family protein weak similarit... 27 7.4
At5g04860.1 68418.m00509 expressed protein 27 7.4
At5g61150.1 68418.m07671 leo1-like family protein weak similarit... 27 9.7
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi... 27 9.7
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi... 27 9.7
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats (PF00400)
(1 weak); identical to coatomer protein complex, beta
prime (beta'-COP) protein {Arabidopsis thaliana}
(GI:9294445); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606) [Homo
sapiens]
Length = 918
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +3
Query: 3 ESVGATNKKSGQSLADPVNYENLFPEYNESLELEYFQRE----FGYEQSTAMEAVEPNSK 170
E + N K+ +SLADP Y NLF ++ +L +E E + ++ A +P+
Sbjct: 776 EDLSKVNPKAAESLADPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSIT 835
Query: 171 ITNTERDIAAEYAEAKRRGPLN 236
+ R++ E E+ G ++
Sbjct: 836 LVEAFRNLQVEAEESLENGNID 857
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats (PF00400)
(1 weak); identical to coatomer protein complex, beta
prime (beta'-COP) protein {Arabidopsis thaliana}
(GI:9294445); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606) [Homo
sapiens]
Length = 918
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +3
Query: 3 ESVGATNKKSGQSLADPVNYENLFPEYNESLELEYFQRE----FGYEQSTAMEAVEPNSK 170
E + N K+ +SLADP Y NLF ++ +L +E E + ++ A +P+
Sbjct: 776 EDLSKVNPKAAESLADPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSIT 835
Query: 171 ITNTERDIAAEYAEAKRRGPLN 236
+ R++ E E+ G ++
Sbjct: 836 LVEAFRNLQVEAEESLENGNID 857
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats (PF00400)
(1 weak); identical to coatomer protein complex, beta
prime (beta'-COP) protein {Arabidopsis thaliana}
(GI:9294445); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606) [Homo
sapiens]
Length = 909
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +3
Query: 3 ESVGATNKKSGQSLADPVNYENLFPEYNESLELEYFQRE----FGYEQSTAMEAVEPNSK 170
E + N K+ +SLADP Y NLF ++ +L +E E + ++ A +P+
Sbjct: 776 EDLSKVNPKAAESLADPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSIT 835
Query: 171 ITNTERDIAAEYAEAKRRGPLN 236
+ R++ E E+ G ++
Sbjct: 836 LVEAFRNLQVEAEESLENGNID 857
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 3 ESVGATNKKSGQSLADPVNYENLFPEYNESLELE 104
+ + N K+ +SLADP Y NLF ++ +L +E
Sbjct: 776 KDLSKVNSKAAESLADPEEYSNLFEDWQVALSVE 809
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 32.7 bits (71), Expect = 0.20
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 27 KSGQSLADPVNYENLFPEYNESLELE 104
K+ +SLADP Y NLF E+ +L LE
Sbjct: 783 KAAESLADPEEYPNLFEEWQVALSLE 808
>At4g01120.1 68417.m00150 G-box binding factor 2 (GBF2) identical to
G-box binding factor 2 (GBF2) SP:P42775 from
[Arabidopsis thaliana];contains Pfam profile: PF00170
bZIP transcription factor
Length = 360
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 242 AATQYNQIQDSEGDSREDATNGNTTSESQQKRK 340
+++++ Q SE D + ++GNTT Q +RK
Sbjct: 157 SSSEHRSSQSSENDGSSNGSDGNTTGGEQSRRK 189
>At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 479
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 72 FPEYNESLELEYFQREFGYEQSTAMEAVEPNSKITNTERDIAAEY 206
FP+ E LELEY + E+ E E N+K T R++ Y
Sbjct: 326 FPQTLEELELEYTRDALELEKKRDKEEDEENNKHRETIRELRESY 370
>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1231
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +3
Query: 57 NYENLFPEYNES-LELEYFQR--EFGYEQSTAMEAVEPNSKITNTE-RDIAAEYAEAKRR 224
+Y+ L + ++ L++ YF R + Y +S +++ +P S + E RD+A ++
Sbjct: 448 SYDELNEQQKDAFLDIAYFFRSQDESYVRSL-LDSYDPESAESGQEFRDLADKFLIGVCD 506
Query: 225 GPLNIPPLLNTIKYKILKGTAERMR 299
G + + LL T+ +I++ TAE+ R
Sbjct: 507 GRVEMHDLLFTMAKEIVEATAEKSR 531
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 155 RAEFKDHEYGTRHRRGIR*SETTRAPQHTAATQYNQIQDSEGD-SREDATNGNTTSESQQ 331
+ F H YG +HR+ + E+ A T +T ++ G+ +++ + TT +SQ
Sbjct: 694 KVAFASHTYGKKHRQNL---ESQSAKNETMSTGPGKLSKDYGEKTKKVSCKNQTTFDSQL 750
Query: 332 K 334
K
Sbjct: 751 K 751
>At3g05860.1 68416.m00658 MADS-box protein (AGL45) similar to
MADS-box protein; PMID: 12837945; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 260
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +3
Query: 3 ESVGATNKKSGQSLADP----VNYENLFPEYNESLELEY-FQREFGY 128
ES GATN + S+ +P + N P +N +Y +Q++FGY
Sbjct: 166 ESSGATNAMTPTSVVEPIISSIQRPNQNPNFNHLSHNQYQYQQQFGY 212
>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 337
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/66 (22%), Positives = 33/66 (50%)
Frame = +3
Query: 3 ESVGATNKKSGQSLADPVNYENLFPEYNESLELEYFQREFGYEQSTAMEAVEPNSKITNT 182
+SV + +GQ ++ P N+ N++ +ES Y+++ + ME ++ S + +
Sbjct: 229 QSVRIKAENAGQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRSLMESR 288
Query: 183 ERDIAA 200
+I A
Sbjct: 289 VAEIVA 294
>At5g61150.2 68418.m07672 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 623
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 134 EHRHGGRRAEFKDHEYGTRHRRGIR*SETTRAPQHTAATQYNQ--IQDSEGD 283
E G RAE KDH R R+GI S+ +P A T + I DS+ D
Sbjct: 574 EEEEEGGRAE-KDHRGSGRKRKGIE-SDEEESPPRKAPTHRRKAVIDDSDED 623
>At5g04860.1 68418.m00509 expressed protein
Length = 782
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 21 NKKSGQSLADPVNYENL 71
NK++ SLADPVNY+ L
Sbjct: 282 NKENESSLADPVNYKTL 298
>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 625
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 134 EHRHGGRRAEFKDHEYGTRHRRGIR*SETTRAPQHTAATQYNQ--IQDSEGD 283
E G RAE KDH R R+GI S+ +P A T + I DS+ D
Sbjct: 576 EEEVAGGRAE-KDHRGSGRKRKGIE-SDEEESPPRKAPTHRRKAVIDDSDED 625
>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 370
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 128 RTEHRHGGRRAEFKDHEYGTRHRR 199
R G RR + +DH YG R RR
Sbjct: 330 RIAREEGERRRKERDHRYGDRRRR 353
>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 424
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 128 RTEHRHGGRRAEFKDHEYGTRHRR 199
R G RR + +DH YG R RR
Sbjct: 384 RIAREEGERRRKERDHRYGDRRRR 407
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,935,929
Number of Sequences: 28952
Number of extensions: 165411
Number of successful extensions: 547
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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