Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10557
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.5  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   4.3  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    21   9.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 662 CGSNGLITILLSSGS 618
           C SNGL+T L S  S
Sbjct: 55  CASNGLVTTLASGSS 69


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 26  EEARRILPDEIRLGSSGC 79
           EE +R+LPD ++   + C
Sbjct: 60  EELKRVLPDALKTSCAKC 77


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 2   RGLRVLGQEEARRILPDEIRLGSSGC 79
           RG      +E +R+LPD ++   + C
Sbjct: 48  RGACTPDADELKRVLPDALKSDCAKC 73


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 104  GTEGPNRTGSQKIPI 60
            G+ GP  TGS+  P+
Sbjct: 1116 GSSGPGSTGSKSPPV 1130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,333
Number of Sequences: 336
Number of extensions: 4391
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)