Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10557
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 135 5e-33
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 95 9e-21
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 95 9e-21
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 46 4e-06
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 36 0.008
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 30 0.28
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 28 1.5
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 2.0
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 3.5
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom... 26 4.6
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 6.1
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 135 bits (327), Expect = 5e-33
Identities = 59/84 (70%), Positives = 70/84 (83%)
Frame = +3
Query: 6 VCVSWDRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKD 185
V ++W +KR+ EFFQ YDWDLLA+RSIWAFGPD G NIL DDTL ++VDK++L SVK+
Sbjct: 718 VNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKE 777
Query: 186 SIVQGFQWGTREGPLCEEPIRNVN 257
I QGFQWGTREGPLC+E IRNVN
Sbjct: 778 YIKQGFQWGTREGPLCDETIRNVN 801
Score = 119 bits (286), Expect = 5e-28
Identities = 52/84 (61%), Positives = 66/84 (78%)
Frame = +2
Query: 257 FKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYT 436
F+++D V+A E ++RGGGQIIPTARRV YS+FL A+PRLMEP VEV APAD + +Y
Sbjct: 802 FRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYD 861
Query: 437 VLAKRRGHVTQDAPVPGSPLYTIK 508
+L +RRGHV QD P PGSPLY ++
Sbjct: 862 LLTRRRGHVLQDIPRPGSPLYLVR 885
Score = 88.2 bits (209), Expect = 1e-18
Identities = 37/52 (71%), Positives = 41/52 (78%)
Frame = +1
Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEP 660
+ +P IDS GFETDLR HTQGQA C VF HWQ+VPGDPLDKSI +PLEP
Sbjct: 885 RALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEP 936
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 672 DLAREFMIKTRRR 710
DLAR+F+IKTRRR
Sbjct: 941 DLARDFLIKTRRR 953
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 95.1 bits (226), Expect = 9e-21
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +2
Query: 257 FKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYT 436
F ILD V+ + +HRGGGQIIPTARRV Y++ L+A+P + EP VE+Q + + +Y+
Sbjct: 686 FNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYS 745
Query: 437 VLAKRRGHVTQDAPVPGSPLYTIK 508
VL K+RGHV + G+PLY IK
Sbjct: 746 VLNKKRGHVFSEEQRVGTPLYNIK 769
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/77 (40%), Positives = 43/77 (55%)
Frame = +3
Query: 21 DRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKDSIVQG 200
D K ++ WD+ AR IW FGPDT G N++VD T L +KDS+V
Sbjct: 611 DFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVA----YLNEIKDSVVAA 666
Query: 201 FQWGTREGPLCEEPIRN 251
F W ++EGP+ EE +R+
Sbjct: 667 FAWASKEGPMFEENLRS 683
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +1
Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLD 630
+ ++P +SFGF +LR T GQAF VF HW + GDPLD
Sbjct: 769 KAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLD 810
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 95.1 bits (226), Expect = 9e-21
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +2
Query: 257 FKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYT 436
F ILD V+ + +HRGGGQIIPTARRV Y++ L+A+P + EP VE+Q + + +Y+
Sbjct: 686 FNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYS 745
Query: 437 VLAKRRGHVTQDAPVPGSPLYTIK 508
VL K+RGHV + G+PLY IK
Sbjct: 746 VLNKKRGHVFSEEQRVGTPLYNIK 769
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/77 (40%), Positives = 43/77 (55%)
Frame = +3
Query: 21 DRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKDSIVQG 200
D K ++ WD+ AR IW FGPDT G N++VD T L +KDS+V
Sbjct: 611 DFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVA----YLNEIKDSVVAA 666
Query: 201 FQWGTREGPLCEEPIRN 251
F W ++EGP+ EE +R+
Sbjct: 667 FAWASKEGPMFEENLRS 683
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +1
Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLD 630
+ ++P +SFGF +LR T GQAF VF HW + GDPLD
Sbjct: 769 KAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLD 810
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Frame = +3
Query: 84 SIWAFGPDTMGPNILVDDTLP-------SEVDKHLLASVKDSIVQGFQWGTREGPLCEEP 242
SI AFGP +GPNIL D T S+ K + + + + +V FQ T +GPLC EP
Sbjct: 750 SIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEP 809
Query: 243 IRNV 254
++ +
Sbjct: 810 VQGI 813
Score = 46.4 bits (105), Expect = 4e-06
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +2
Query: 308 GQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPG 487
GQ+I + FL +PRLM +VQA ++ + VY V++KRRG V + G
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEG 900
Query: 488 SPLYTIK 508
+P + +K
Sbjct: 901 TPFFIVK 907
Score = 33.5 bits (73), Expect = 0.030
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDP 624
+ +P ++SFGF ++ T G A+ +FH ++++ +P
Sbjct: 907 KALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENP 946
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 63 WDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKDSIVQGFQWGTREGPLCEEP 242
W+++ R +W D+ G N D+ V++ L S K SI+Q W GPL + P
Sbjct: 406 WEVMTGRCVWKCSLDSFG-NAHNIDSDEDAVNESLSHSTKSSIIQSLAW----GPLSDSP 460
Query: 243 I 245
+
Sbjct: 461 V 461
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 344 SAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHV 463
+AFL A P ++EP + V + AP + V L KR+ +
Sbjct: 665 TAFLQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATI 704
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.9 bits (59), Expect = 1.5
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +1
Query: 604 QIVPGDPLDKSIVIRPLEPQPAT 672
+++ G+PL K +V++ +P+P+T
Sbjct: 1071 RLLKGEPLPKDVVVKEFKPRPST 1093
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.5 bits (58), Expect = 2.0
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = -2
Query: 265 DLEFTFLMGSSQSGPSRVPHWKP*TMLSLTEARRCLSTSEGRVS--STRMLGPIVSGPKA 92
DLE F S QS PS+ P P S +RR S+S G++S S P +
Sbjct: 86 DLENMFEESSKQSPPSKSPTKNPSKKSSNNSSRRS-SSSVGKLSNVSNMQSSPSKDPFVS 144
Query: 91 QIERAARRSQSYFVWKNSPSLFLSQDTQT 5
Q S S F K S SQ + T
Sbjct: 145 QDYEKESISSSQFSKKYSEGSLKSQQSNT 173
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 5 GLRVLGQEEARRILPDEIRLGSSG 76
G +++GQ+EA + + D +RL +G
Sbjct: 501 GKKIIGQDEALKAIADAVRLSRAG 524
>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 24 RKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNI 125
RK+LG F T+Y ++ A + A+ DT G NI
Sbjct: 178 RKKLGFFTMTRYQYNETAGEGVTAYVIDT-GINI 210
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 368 RLMEPYLFVEVQAPADCVSAVYTVLAKRRG 457
R++EPY+ V + P + V V L +RG
Sbjct: 669 RILEPYMDVTITTPEEYVGIVSKDLVGKRG 698
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,889
Number of Sequences: 5004
Number of extensions: 66836
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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