Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10557
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             169   1e-42
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                 121   7e-28
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    90   1e-18
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 43   3e-04
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      31   1.2  
SB_52928| Best HMM Match : PKD (HMM E-Value=0)                         30   2.1  
SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_4341| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_42747| Best HMM Match : Sugar_tr (HMM E-Value=0.23)                 29   4.9  
SB_23374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 28   6.5  
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  28   8.6  

>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  169 bits (412), Expect = 1e-42
 Identities = 79/85 (92%), Positives = 83/85 (97%)
 Frame = +2

Query: 254 EFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVY 433
           +FKILDAVIA EP+HRGGGQIIPTARRVAYSAFLMATPRLMEPY FVEVQAPADCVS+VY
Sbjct: 656 KFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCVSSVY 715

Query: 434 TVLAKRRGHVTQDAPVPGSPLYTIK 508
           TVLA+RRGHVTQDAPVPGSPLYTIK
Sbjct: 716 TVLARRRGHVTQDAPVPGSPLYTIK 740



 Score =  160 bits (389), Expect = 9e-40
 Identities = 69/83 (83%), Positives = 77/83 (92%)
 Frame = +3

Query: 6   VCVSWDRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKD 185
           V +SW++K+LGEFFQTKYDWDLLAARSIWAFGP+  GPNILVDDTLPSEVDK LL +VKD
Sbjct: 573 VLISWNKKKLGEFFQTKYDWDLLAARSIWAFGPENTGPNILVDDTLPSEVDKSLLNTVKD 632

Query: 186 SIVQGFQWGTREGPLCEEPIRNV 254
           SI+QGFQW TREGPLC+EPIRNV
Sbjct: 633 SIIQGFQWATREGPLCDEPIRNV 655



 Score =  121 bits (291), Expect = 7e-28
 Identities = 52/56 (92%), Positives = 54/56 (96%)
 Frame = +1

Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEPQPAT 672
           + F+PAIDSFGFETDLRTHTQGQAFCL VFHHWQIVPGDPLDKSIVIRPLEPQPAT
Sbjct: 740 KAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPAT 795


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score =  121 bits (291), Expect = 7e-28
 Identities = 52/56 (92%), Positives = 54/56 (96%)
 Frame = +1

Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEPQPAT 672
           + F+PAIDSFGFETDLRTHTQGQAFCL VFHHWQIVPGDPLDKSIVIRPLEPQPAT
Sbjct: 50  KAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPAT 105



 Score =  104 bits (250), Expect = 6e-23
 Identities = 47/50 (94%), Positives = 49/50 (98%)
 Frame = +2

Query: 359 ATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIK 508
           ATPRLMEPY FVEVQAPADCVS+VYTVLA+RRGHVTQDAPVPGSPLYTIK
Sbjct: 1   ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIK 50


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 40/84 (47%), Positives = 55/84 (65%)
 Frame = +2

Query: 257 FKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYT 436
           F I D  +  + +HRGGGQIIPTARRV Y+  L A P L+EP   VE+Q P   V  +Y 
Sbjct: 677 FNIHDVTLHADAIHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYG 736

Query: 437 VLAKRRGHVTQDAPVPGSPLYTIK 508
           VL +RRG V +++ V G+P++ +K
Sbjct: 737 VLNRRRGQVLEESNVAGTPMFIVK 760



 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 36/78 (46%), Positives = 48/78 (61%)
 Frame = +3

Query: 21  DRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKDSIVQG 200
           D K    +    Y WD+  AR IW+FGP+  GPN+LVD +   +     L  +KDS+V G
Sbjct: 602 DFKIRARYLADTYGWDVNEARKIWSFGPEGTGPNLLVDVSKGVQY----LNEIKDSVVAG 657

Query: 201 FQWGTREGPLCEEPIRNV 254
           FQW T+EGPLC+E +R V
Sbjct: 658 FQWATKEGPLCDENVRGV 675



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 22/42 (52%), Positives = 30/42 (71%)
 Frame = +1

Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLD 630
           + ++P ++SFGF  DLR+ T GQAF   VF HWQ++PGD  D
Sbjct: 760 KAYLPVMESFGFTADLRSKTGGQAFPQCVFDHWQVLPGDVHD 801


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 32/73 (43%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
 Frame = +3

Query: 75  AARSIWAFGPDTMGPNILV----DDTLPS------EVDKHLLASVK---DSIVQGFQWGT 215
           AA  IWAFGP   GPNIL+    D   PS      E   +     K    SIV GFQ  T
Sbjct: 178 AADHIWAFGPRGTGPNILLNRDPDYPRPSIWQCLDENAGYKAGEYKPYDSSIVSGFQMTT 237

Query: 216 REGPLCEEPIRNV 254
             GPLC EP+  V
Sbjct: 238 LSGPLCAEPLMGV 250



 Score = 37.1 bits (82), Expect = 0.014
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 308 GQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPG 487
           GQ++   +     AF     RLM       +QA A+ +  +Y V+A+R G V  +    G
Sbjct: 390 GQLMSAVKEGCRRAFQQQPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEG 449

Query: 488 SPLYTIK 508
           S ++ ++
Sbjct: 450 SDVFDVE 456



 Score = 35.9 bits (79), Expect = 0.032
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDP 624
           +  +P  +SFGF  ++R  T G A    +F HW+ +  DP
Sbjct: 456 EAVLPVAESFGFSEEIRKRTSGLANPQLMFSHWEAIDLDP 495


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = +1

Query: 319 PHGATRGVFSISNGDPS---SDGAVSVC*GASAGRLRIRRLHGAG*EERSRDPGRSG 480
           P G T GV+SIS  D S   SDG      G S G     R  G+     SR    SG
Sbjct: 433 PRGTTSGVYSISGSDDSASDSDGGGGGGGGGSGGSSPSHRSSGSSSSSSSRRSSPSG 489


>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
          Length = 1624

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 280 DDSIQDLEFTFLMGSSQSGPSRVPHWKP 197
           +DS  + EF+F  G S SGPS V H  P
Sbjct: 719 NDSCLEFEFSFGDGESSSGPSTVSHSYP 746


>SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
 Frame = +2

Query: 17   LGQEEARRILPDEIRLGSSGCPFDLGLRSR------HDGTQHSSR*HSTLRSGQASPGFG 178
            LG+   RR++   +R     C F + L +       HDG       H +   G  + GF 
Sbjct: 1013 LGKSPLRRLIQRRLRRQKESCEFPIELEAAETVIELHDGPVSQDMGHRSFNQGMMNEGFA 1072

Query: 179  QG*HCSRLPVGYAG 220
             G +  R   GY G
Sbjct: 1073 LGGY-DRGGEGYKG 1085


>SB_4341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 227 RPFPRTPLEALNNAILDRSQEMLVHFGG 144
           R  PR+P   + N +LD + E+L+ FGG
Sbjct: 27  RVIPRSPRWLVANGLLDEALEILMKFGG 54


>SB_42747| Best HMM Match : Sugar_tr (HMM E-Value=0.23)
          Length = 527

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 227 RPFPRTPLEALNNAILDRSQEMLVHFGG 144
           R  PR+P   + N +LD + E+L+ FGG
Sbjct: 160 RVIPRSPRWLVANGLLDEALEILMKFGG 187


>SB_23374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 117 VPSCRDRRPKSNGQPEDPNRISSGRILLASSC 22
           + SCR R P+++ +P   NR+  G  + A SC
Sbjct: 25  IDSCRIRLPETDNRPLYVNRLPLGNNIFAYSC 56


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 514 VPAIDSFGFETDLRTHTQGQ 573
           VP  D FG+ T+LR+ TQG+
Sbjct: 184 VPLNDMFGYATELRSQTQGK 203


>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2286

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = -1

Query: 431  RRRIRSRPALAPQQTDT---APSDEGSP 357
            R+R +  PAL+PQ+T T   +PS+ GSP
Sbjct: 1645 RQRYQRPPALSPQRTPTTTPSPSELGSP 1672


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 280  RAGAAAPGRRTDHPHGATRGVFSISNGDPSSD 375
            R+G +     +  P G T GV+S+  G   SD
Sbjct: 920  RSGISGASSHSSSPRGTTSGVYSMGGGPSDSD 951


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,839,127
Number of Sequences: 59808
Number of extensions: 602773
Number of successful extensions: 1866
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1863
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)