Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10557
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 160 1e-39
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 156 2e-38
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 96 2e-20
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 96 2e-20
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z81041-9|CAJ55253.1| 824|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z81041-8|CAB02784.1| 829|Caenorhabditis elegans Hypothetical pr... 33 0.27
AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium chann... 29 4.3
AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical... 29 4.3
U49830-7|AAM98046.1| 774|Caenorhabditis elegans Neuronal igcam ... 28 5.7
U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam ... 28 5.7
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ... 28 5.7
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ... 28 5.7
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 160 bits (388), Expect = 1e-39
Identities = 68/83 (81%), Positives = 78/83 (93%)
Frame = +3
Query: 6 VCVSWDRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKD 185
V + W+R+RLGEFFQTKY+WDLLAARSIWAFGPDT GPNIL+DDTLPSEVDKHLL++V++
Sbjct: 709 VQIGWNRRRLGEFFQTKYNWDLLAARSIWAFGPDTTGPNILLDDTLPSEVDKHLLSTVRE 768
Query: 186 SIVQGFQWGTREGPLCEEPIRNV 254
S+VQGFQW TREGPLCEEPIR V
Sbjct: 769 SLVQGFQWATREGPLCEEPIRQV 791
Score = 151 bits (366), Expect = 5e-37
Identities = 70/84 (83%), Positives = 77/84 (91%)
Frame = +2
Query: 254 EFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVY 433
+FK+LDA IA EPL+RGGGQ+IPTARR AYSAFLMATPRLMEPY VEV APADCV+AVY
Sbjct: 792 KFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVY 851
Query: 434 TVLAKRRGHVTQDAPVPGSPLYTI 505
TVLAKRRGHVT DAP+PGSP+YTI
Sbjct: 852 TVLAKRRGHVTTDAPMPGSPMYTI 875
Score = 98.3 bits (234), Expect = 5e-21
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = +1
Query: 511 FVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEPQP 666
++P +DSFGFETDLR HTQGQAFC+ FHHWQ+VPGDPLDKSIVI+ L+ QP
Sbjct: 878 YIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQP 929
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 621 PARQEYCYQAIGTTASDDLAREFMIKTRRR 710
P + + + + LAREFMIKTRRR
Sbjct: 915 PLDKSIVIKTLDVQPTPHLAREFMIKTRRR 944
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 156 bits (378), Expect = 2e-38
Identities = 67/83 (80%), Positives = 77/83 (92%)
Frame = +3
Query: 6 VCVSWDRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKD 185
V + W+R+RLGEFFQTKY+WDLLAARSIWAFG DT GPNIL+DDTLPSEVDKHLL++V++
Sbjct: 584 VQIGWNRRRLGEFFQTKYNWDLLAARSIWAFGLDTTGPNILLDDTLPSEVDKHLLSTVRE 643
Query: 186 SIVQGFQWGTREGPLCEEPIRNV 254
S+VQGFQW TREGPLCEEPIR V
Sbjct: 644 SLVQGFQWATREGPLCEEPIRQV 666
Score = 151 bits (366), Expect = 5e-37
Identities = 70/84 (83%), Positives = 77/84 (91%)
Frame = +2
Query: 254 EFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVY 433
+FK+LDA IA EPL+RGGGQ+IPTARR AYSAFLMATPRLMEPY VEV APADCV+AVY
Sbjct: 667 KFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVY 726
Query: 434 TVLAKRRGHVTQDAPVPGSPLYTI 505
TVLAKRRGHVT DAP+PGSP+YTI
Sbjct: 727 TVLAKRRGHVTTDAPMPGSPMYTI 750
Score = 98.3 bits (234), Expect = 5e-21
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = +1
Query: 511 FVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEPQP 666
++P +DSFGFETDLR HTQGQAFC+ FHHWQ+VPGDPLDKSIVI+ L+ QP
Sbjct: 753 YIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQP 804
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 621 PARQEYCYQAIGTTASDDLAREFMIKTRRR 710
P + + + + LAREFMIKTRRR
Sbjct: 790 PLDKSIVIKTLDVQPTPHLAREFMIKTRRR 819
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 96.3 bits (229), Expect = 2e-20
Identities = 41/84 (48%), Positives = 58/84 (69%)
Frame = +2
Query: 257 FKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYT 436
F + D + + +HRGGGQIIPTARRV Y++ L A PRL+EP VE+Q P V +Y
Sbjct: 696 FNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYG 755
Query: 437 VLAKRRGHVTQDAPVPGSPLYTIK 508
VL +RRGHV +++ V G+P++ +K
Sbjct: 756 VLNRRRGHVFEESQVTGTPMFVVK 779
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/76 (46%), Positives = 46/76 (60%)
Frame = +3
Query: 27 KRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKDSIVQGFQ 206
K + KY++D+ AR IW FGPD GPN+L+D T + L +KDS+V GFQ
Sbjct: 623 KARAKILAEKYEYDVTEARKIWCFGPDGTGPNLLMDVTKGVQ----YLNEIKDSVVAGFQ 678
Query: 207 WGTREGPLCEEPIRNV 254
W TREG L +E +R V
Sbjct: 679 WATREGVLSDENMRGV 694
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +1
Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLD 630
+ ++P +SFGF DLR++T GQAF VF HWQ++PGDPL+
Sbjct: 779 KAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLE 820
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 96.3 bits (229), Expect = 2e-20
Identities = 41/84 (48%), Positives = 58/84 (69%)
Frame = +2
Query: 257 FKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYT 436
F + D + + +HRGGGQIIPTARRV Y++ L A PRL+EP VE+Q P V +Y
Sbjct: 696 FNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYG 755
Query: 437 VLAKRRGHVTQDAPVPGSPLYTIK 508
VL +RRGHV +++ V G+P++ +K
Sbjct: 756 VLNRRRGHVFEESQVTGTPMFVVK 779
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +3
Query: 54 KYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKDSIVQGFQWGTREGPLC 233
KY++ + AR IW FGPD GPN+L+D T + L +KDS+V GFQW TREG L
Sbjct: 632 KYEYAVTEARKIWCFGPDGTGPNLLMDVTKGVQ----YLNEIKDSVVAGFQWATREGVLS 687
Query: 234 EEPIRNV 254
+E +R V
Sbjct: 688 DENMRGV 694
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +1
Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLD 630
+ ++P +SFGF DLR++T GQAF VF HWQ++PGDPL+
Sbjct: 779 KAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLE 820
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 508 TFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDP 624
+ +P ++SF F LR T G A F HWQ++ DP
Sbjct: 611 SLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 508 TFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDP 624
+ +P ++SF F LR T G A F HWQ++ DP
Sbjct: 800 SLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 838
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 87 IWAFGPDTMGPNILVDDTLPSEVD------KHLLASVKDSIVQGFQWGTREGPLCEEPIR 248
IWAFGP+ NIL ++ + D + + ++V GF+ GPLC E +
Sbjct: 654 IWAFGPERARANILFNNVQNYDRDSVWRKTEFGVRRYDQALVAGFELFCNTGPLCNEIMH 713
Query: 249 NV 254
+
Sbjct: 714 GI 715
>Z81041-9|CAJ55253.1| 824|Caenorhabditis elegans Hypothetical
protein C27A7.1b protein.
Length = 824
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 331 SRRGDDLSAAPVQRLLRDDSIQDLEFTFLMGSSQSG-PSRVP 209
SR+G+D A ++ L RD++ FTFL QS PS +P
Sbjct: 620 SRKGNDARRAIIEVLSRDEASNPSNFTFLNAKYQSNCPSHIP 661
>Z81041-8|CAB02784.1| 829|Caenorhabditis elegans Hypothetical
protein C27A7.1a protein.
Length = 829
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 331 SRRGDDLSAAPVQRLLRDDSIQDLEFTFLMGSSQSG-PSRVP 209
SR+G+D A ++ L RD++ FTFL QS PS +P
Sbjct: 625 SRKGNDARRAIIEVLSRDEASNPSNFTFLNAKYQSNCPSHIP 666
>AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium channel,
beta subunit protein1 protein.
Length = 526
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 410 PALAPQQTDTAPSDEGSPLEMLNTPRVAP 324
P L PQQ+ + S G P+ +N P +AP
Sbjct: 426 PQLQPQQSIASMSQMGGPMGSMNPPYLAP 454
>AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical
protein F07B7.14 protein.
Length = 401
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 177 PKPGDAC-PLRRVECHRLECWVPSCRDRRPKSNGQP-EDPNRISSGRILLASSCPRT 13
P+P + P + + W SCR P+S+ QP E+P + L + PRT
Sbjct: 55 PEPRSSSQPKENLPEENISTWPASCRRPEPRSSSQPKENPPKEKISTRLASCRRPRT 111
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 162 ACPLRRVECHRLE-CWVPSCRDRRPKSNGQPED 67
A RR+ R+ W+ SCR P+S+ QP++
Sbjct: 6 AASRRRISRKRMSRTWLASCRRPEPRSSSQPKE 38
>U49830-7|AAM98046.1| 774|Caenorhabditis elegans Neuronal igcam
protein 6, isoform c protein.
Length = 774
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 48 QTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSE---VDKHLLASVKDSIVQGFQWGTR 218
+T YD DL A + +FGP + I PSE + K ++ +KD+ +W +
Sbjct: 605 ETAYDCDLKAIDNHGSFGPASKKFRIHTKQHPPSETPLIGKLMMKQMKDTYTTILEWSSI 664
Query: 219 E 221
E
Sbjct: 665 E 665
>U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam
protein 6, isoform a protein.
Length = 964
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 48 QTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSE---VDKHLLASVKDSIVQGFQWGTR 218
+T YD DL A + +FGP + I PSE + K ++ +KD+ +W +
Sbjct: 795 ETAYDCDLKAIDNHGSFGPASKKFRIHTKQHPPSETPLIGKLMMKQMKDTYTTILEWSSI 854
Query: 219 E 221
E
Sbjct: 855 E 855
>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
protein 6, isoform b protein.
Length = 1227
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 48 QTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSE---VDKHLLASVKDSIVQGFQWGTR 218
+T YD DL A + +FGP + I PSE + K ++ +KD+ +W +
Sbjct: 1058 ETAYDCDLKAIDNHGSFGPASKKFRIHTKQHPPSETPLIGKLMMKQMKDTYTTILEWSSI 1117
Query: 219 E 221
E
Sbjct: 1118 E 1118
>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
protein 6, isoform d protein.
Length = 1196
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 48 QTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSE---VDKHLLASVKDSIVQGFQWGTR 218
+T YD DL A + +FGP + I PSE + K ++ +KD+ +W +
Sbjct: 1027 ETAYDCDLKAIDNHGSFGPASKKFRIHTKQHPPSETPLIGKLMMKQMKDTYTTILEWSSI 1086
Query: 219 E 221
E
Sbjct: 1087 E 1087
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,193
Number of Sequences: 27780
Number of extensions: 429003
Number of successful extensions: 1133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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