Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10557
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 156 2e-38
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 156 2e-38
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 149 1e-36
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 100 8e-22
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 44 1e-04
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 32 0.43
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 31 0.75
At3g49260.2 68416.m05384 calmodulin-binding family protein low s... 29 2.3
At3g49260.1 68416.m05383 calmodulin-binding family protein low s... 29 2.3
At3g24430.1 68416.m03066 expressed protein contains Pfam profile... 29 4.0
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 28 5.3
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ... 28 7.0
At5g13650.2 68418.m01585 elongation factor family protein contai... 28 7.0
At5g13650.1 68418.m01584 elongation factor family protein contai... 28 7.0
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 28 7.0
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 7.0
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 28 7.0
At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase... 27 9.3
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 27 9.3
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 156 bits (378), Expect = 2e-38
Identities = 65/83 (78%), Positives = 77/83 (92%)
Frame = +3
Query: 6 VCVSWDRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKD 185
V + W+RK+LG+FF+TKYDWDLLAARSIWAFGPD GPNIL+DDTLP+EVD++L+ +VKD
Sbjct: 719 VSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDRNLMMAVKD 778
Query: 186 SIVQGFQWGTREGPLCEEPIRNV 254
SIVQGFQWG REGPLC+EPIRNV
Sbjct: 779 SIVQGFQWGAREGPLCDEPIRNV 801
Score = 140 bits (340), Expect = 6e-34
Identities = 62/85 (72%), Positives = 73/85 (85%)
Frame = +2
Query: 254 EFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVY 433
+FKI+DA IA EPLHRG GQ+IPTARRVAYSAFLMATPRLMEP +VE+Q P DCV+A+Y
Sbjct: 802 KFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIY 861
Query: 434 TVLAKRRGHVTQDAPVPGSPLYTIK 508
TVL++RRGHVT D P PG+P Y +K
Sbjct: 862 TVLSRRRGHVTSDVPQPGTPAYIVK 886
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +1
Query: 481 PRVAALHHQTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEP 660
P A + F+P I+SFGFETDLR HTQGQAFCL VF HW IVPGDPLDK+I +RPLEP
Sbjct: 878 PGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKAIQLRPLEP 937
Query: 661 QP 666
P
Sbjct: 938 AP 939
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 156 bits (378), Expect = 2e-38
Identities = 65/83 (78%), Positives = 77/83 (92%)
Frame = +3
Query: 6 VCVSWDRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKD 185
V + W+RK+LG+FF+TKYDWDLLAARSIWAFGPD GPNIL+DDTLP+EVD++L+ +VKD
Sbjct: 719 VSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDRNLMMAVKD 778
Query: 186 SIVQGFQWGTREGPLCEEPIRNV 254
SIVQGFQWG REGPLC+EPIRNV
Sbjct: 779 SIVQGFQWGAREGPLCDEPIRNV 801
Score = 140 bits (340), Expect = 6e-34
Identities = 62/85 (72%), Positives = 73/85 (85%)
Frame = +2
Query: 254 EFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVY 433
+FKI+DA IA EPLHRG GQ+IPTARRVAYSAFLMATPRLMEP +VE+Q P DCV+A+Y
Sbjct: 802 KFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIY 861
Query: 434 TVLAKRRGHVTQDAPVPGSPLYTIK 508
TVL++RRGHVT D P PG+P Y +K
Sbjct: 862 TVLSRRRGHVTSDVPQPGTPAYIVK 886
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +1
Query: 481 PRVAALHHQTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEP 660
P A + F+P I+SFGFETDLR HTQGQAFCL VF HW IVPGDPLDK+I +RPLEP
Sbjct: 878 PGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKAIQLRPLEP 937
Query: 661 QP 666
P
Sbjct: 938 AP 939
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 149 bits (362), Expect = 1e-36
Identities = 63/83 (75%), Positives = 74/83 (89%)
Frame = +3
Query: 6 VCVSWDRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKD 185
V + W+R +LG+FF+TKYDWDLLAARSIWAFGPD G NIL+DDTLP+EVD++L+ VKD
Sbjct: 705 VSIDWNRVQLGDFFRTKYDWDLLAARSIWAFGPDKQGTNILLDDTLPTEVDRNLMMGVKD 764
Query: 186 SIVQGFQWGTREGPLCEEPIRNV 254
SIVQGFQWG REGPLC+EPIRNV
Sbjct: 765 SIVQGFQWGAREGPLCDEPIRNV 787
Score = 138 bits (334), Expect = 3e-33
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = +2
Query: 254 EFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVY 433
+FKI+DA IA EPLHRG GQ+IPTARRVAYSAFLMATPRLMEP +VE+Q P DCV+A+Y
Sbjct: 788 KFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIY 847
Query: 434 TVLAKRRGHVTQDAPVPGSPLYTIK 508
TVL++RRG+VT D P PG+P Y +K
Sbjct: 848 TVLSRRRGYVTSDVPQPGTPAYIVK 872
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +1
Query: 481 PRVAALHHQTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEP 660
P A + F+P I+SFGFETDLR HTQGQAFCL VF HW IVPGDPLDK+I +RPLEP
Sbjct: 864 PGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKAIQLRPLEP 923
Query: 661 QP 666
P
Sbjct: 924 AP 925
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 100 bits (240), Expect = 8e-22
Identities = 42/84 (50%), Positives = 61/84 (72%)
Frame = +2
Query: 257 FKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYT 436
F++ D V+ + +HRGGGQ+IPTARRV Y++ + A PRL+EP VE+QAP + +Y+
Sbjct: 687 FEVCDVVLHSDAIHRGGGQVIPTARRVIYASQITAKPRLLEPVYMVEIQAPEGALGGIYS 746
Query: 437 VLAKRRGHVTQDAPVPGSPLYTIK 508
VL ++RGHV ++ PG+PLY IK
Sbjct: 747 VLNQKRGHVFEEMQRPGTPLYNIK 770
Score = 71.3 bits (167), Expect = 6e-13
Identities = 34/78 (43%), Positives = 48/78 (61%)
Frame = +3
Query: 21 DRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKDSIVQG 200
D K + ++ WD A+ IWAFGP+T GPN++VD + V L +KDS+V G
Sbjct: 612 DPKIRSKILAEEFGWDKDLAKKIWAFGPETTGPNMVVD--MCKGV--QYLNEIKDSVVAG 667
Query: 201 FQWGTREGPLCEEPIRNV 254
FQW ++EGPL EE +R +
Sbjct: 668 FQWASKEGPLAEENMRGI 685
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +1
Query: 505 QTFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLD 630
+ ++P ++SFGF + LR T GQAF VF HW+++ DPL+
Sbjct: 770 KAYLPVVESFGFSSQLRAATSGQAFPQCVFDHWEMMSSDPLE 811
>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +2
Query: 308 GQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPG 487
GQ++ + +A L PR++E F E+ + + +Y VL++RR + ++ G
Sbjct: 853 GQVMTAVKDACRAAVLQTNPRIVEAMYFCELNTAPEYLGPMYAVLSRRRARILKEEMQEG 912
Query: 488 SPLYTI 505
S L+T+
Sbjct: 913 SSLFTV 918
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 511 FVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDP 624
+VP +SFGF +LR T G A L V HW+++ DP
Sbjct: 921 YVPVSESFGFADELRKGTSGGASALMVLSHWEMLEEDP 958
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +3
Query: 144 PSEVDKHLLAS----VKDSIVQGFQWGTREGPLCEEPI 245
P+EV + L S ++ SIV GFQ T GPLC+EP+
Sbjct: 786 PAEVSETALYSEALTLESSIVSGFQLATASGPLCDEPM 823
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 54 KYDWDLLAARSIWAFGPDTMGPNIL 128
K +W L R IWA GP GPNIL
Sbjct: 727 KTEWSKLLKR-IWALGPREKGPNIL 750
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 359 ATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPG 487
A PR++EP + VEV P + + V L RRG + PG
Sbjct: 683 AGPRMLEPIMRVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG 725
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 314 IIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDA 475
+I T + A A + A RL++ FVEV DCV+ Y +A +++ A
Sbjct: 1373 LIRTGKSTAIEAGMFALDRLLDIKRFVEVAEEHDCVNLFYGYVASENYLISEAA 1426
>At3g49260.2 68416.m05384 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 471
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 226 GPSRVPHWKP*TMLSLTEARRCLSTSEGRVSSTRMLGPIVSGPKAQIER 80
G S +P+W T C S+S G +T GP PK+ I R
Sbjct: 402 GTSFMPYWNSSTKNGSVNGSGCDSSSSGGAITTGYPGPRSPNPKSDIRR 450
>At3g49260.1 68416.m05383 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 471
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 226 GPSRVPHWKP*TMLSLTEARRCLSTSEGRVSSTRMLGPIVSGPKAQIER 80
G S +P+W T C S+S G +T GP PK+ I R
Sbjct: 402 GTSFMPYWNSSTKNGSVNGSGCDSSSSGGAITTGYPGPRSPNPKSDIRR 450
>At3g24430.1 68416.m03066 expressed protein contains Pfam profile
PF01883: Domain of unknown function
Length = 532
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 61 IGIFWLPVRFGPSVPTRWDPTF*SMTLYPPKWTSISWLRSRIALFKASSGVRGKGRSV-R 237
+GIF V +GPS+PT +P + + P K T I + L S G G+GR++ R
Sbjct: 208 VGIFDADV-YGPSLPTMVNPESRILEMNPEKKTIIPTEYMGVKL--VSFGFAGQGRAIMR 264
Query: 238 SP 243
P
Sbjct: 265 GP 266
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = -3
Query: 147 RVECHRLECWVPSCRDRRPKS---NGQPEDPNRISSGRILLASSCPRTRR 7
RV C+ L CW RR KS G P R R L + C + R+
Sbjct: 1162 RVGCNILFCWNTKKTQRRSKSKQVKGTPVRSRRNRKSRFSLFNGCAKPRK 1211
>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 977
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = -3
Query: 195 EQCYP*PKPGDACPLRRVECHRLECWVPS---CRDRRPKSNGQPEDPNRISSG 46
E C P P+P + L + CW P RD P+ +PE I+ G
Sbjct: 128 ELCSPTPEPPELISLISQIIDEVVCWKPQPELVRDLEPEPEPEPEPEPEINLG 180
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 368 RLMEPYLFVEVQAPADCVSAVYTVLAKRRGHV 463
+L+EPY V+ P + V +L KRRG +
Sbjct: 473 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQM 504
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 368 RLMEPYLFVEVQAPADCVSAVYTVLAKRRGHV 463
+L+EPY V+ P + V +L KRRG +
Sbjct: 472 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQM 503
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 326 ARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRG 457
A R+ Y+A A P ++EP + VE++ P + V + KR+G
Sbjct: 645 AFRLCYTA---ARPVILEPVMLVELKVPTEFQGTVAGDINKRKG 685
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 443 PAPCRRRIRSRPALAPQQTDTAPSDEGSPLEMLNTP 336
P+P RR RSR LA + +P SP+ L P
Sbjct: 402 PSPLYRRNRSRSPLAKRGRSDSPGRSPSPVARLRDP 437
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 326 ARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRG 457
A R+ Y+A A P ++EP + VE++ P + V + KR+G
Sbjct: 645 AFRLCYTA---ARPVILEPVMLVELKVPTEFQGTVAGDINKRKG 685
>At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase,
putative similar to mitogen-activated protein kinase
MEKK1 GP|1255448 [Arabidopsis thaliana]
Length = 608
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 340 RHASRRGDDLSAAPVQRLLRDDSIQDLEFTFLMGSSQS 227
+ RRG D + PV+RL R D+ +++ + SS S
Sbjct: 10 KSTGRRGGDKNITPVRRLERRDAARNINYDAASCSSSS 47
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = -3
Query: 138 CHRLECWVPSCRDRRPKSNGQPEDPNRISSGRILLASSCPRTRR 7
C L CW RR K G R R L S+C R R+
Sbjct: 1073 CSLLFCWNTQKSPRRTKIKGTSMRSRRSRERRFSLFSACARPRK 1116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,437
Number of Sequences: 28952
Number of extensions: 401739
Number of successful extensions: 1071
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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