Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10555X
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    55   5e-09
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   1.5  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   1.5  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    27   1.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   4.5  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   5.9  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   7.8  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   7.8  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 55.2 bits (127), Expect = 5e-09
 Identities = 24/69 (34%), Positives = 39/69 (56%)
 Frame = +1

Query: 271 LMYTLFLTGRCDYLLGQNPPAIPSLPVFRVYCMVSKAQFVIDWHNYAYSIMAMTLEPDHM 450
           L + LF+     +L  QNPP IP   + +   ++   +F+IDWHN+ YSI+A+ L   H 
Sbjct: 111 LNWALFVRKPASFLFIQNPPCIPVFFIAQCLHILRGTKFIIDWHNFGYSILALKLGKQHT 170

Query: 451 LVRMARSTE 477
            V++ +  E
Sbjct: 171 FVKLLKIYE 179



 Score = 45.2 bits (102), Expect = 5e-06
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +3

Query: 24  VVVLGDIGRSPRMQYHALSLANNGLDVKIISY 119
           V+VLGDI RSPRMQYHA+S A  G  V ++ Y
Sbjct: 29  VLVLGDIARSPRMQYHAVSFAKLGWKVDLLGY 60


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 394 RSQTGPLKPCNTHERLARMVWRVGSGPTNSRTFQ*GIGYTLSLHSVINFILSN*NGEMYL 215
           R Q  P+       +     W V   P   R F   + +TL   SV+  +  + NG+ YL
Sbjct: 270 REQIAPVSDTEAARKTTSQSWYVTYNPACKRVFNINLVHTLEHPSVVCCVKFSNNGK-YL 328

Query: 214 ST 209
           +T
Sbjct: 329 AT 330


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 69  HALSLANNGLDVKIISYVETDPLPEVLNNPHITVIKLHPF 188
           H   L++  LD   I  +E  PLP V  N HI   +L  F
Sbjct: 359 HLPLLSDEKLDKSAIDKIEPTPLPSVHMNSHIAKGELPKF 398


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 271 LMYTLFLTGRCDYLLGQNPPAIPSL 345
           L Y L L G+C+Y++  +PP+   L
Sbjct: 185 LYYKLALEGKCNYVIRYSPPSSSKL 209


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 197  MGPCSTQIHFPISVRKDEVYD 259
            MGP    I FP+ + KDE +D
Sbjct: 3604 MGPLFNTIPFPLFLEKDESFD 3624


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 108 IISYVETDPLPEVLNNPHITVIKLHPFELK 197
           ++  + T+P  +VLN+  + + K+ PF L+
Sbjct: 257 MLDLLGTNPPEDVLNDIELKIYKIRPFNLE 286


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 327 TRHTILASLSCVLHGFKGPVCDRLAQLC-ILDNGHDS*TGPHA 452
           +R+    +   +L+  K  +CDR    C ++D  H S TG +A
Sbjct: 165 SRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAHRS-TGNYA 206


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 24  VVVLGDIGRS-PRMQYHALSLANNGLDVKIISYVETDPL 137
           + +LG +G +  R+QY    LA NG+ +++ + +  D L
Sbjct: 279 IAILGKVGLALVRLQYLKSDLACNGIPIQLNTSIWLDEL 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,310
Number of Sequences: 5004
Number of extensions: 51592
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)