Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10555X
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 62 2e-10
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877... 58 3e-09
12_02_0115 - 13809015-13809068,13809530-13809637,13811004-138111... 28 4.5
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 28 4.5
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 28 4.5
10_03_0041 + 7314749-7315012,7315111-7316157,7317592-7317681,731... 27 6.0
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 27 7.9
09_04_0381 + 17128437-17128655,17129250-17129331,17129409-171295... 27 7.9
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 62.1 bits (144), Expect = 2e-10
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +3
Query: 9 RKVAKVVVLGDIGRSPRMQYHALSLANN-GLDVKIISYVETDPLPEVLNNPHITVIKLHP 185
RK A VVVLGDIGRSPRMQYH+LSLAN G++V I++ +DP + NP I + ++
Sbjct: 10 RKRAAVVVLGDIGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKS 69
Query: 186 FEL 194
+L
Sbjct: 70 VQL 72
Score = 54.8 bits (126), Expect = 3e-08
Identities = 19/64 (29%), Positives = 40/64 (62%)
Frame = +1
Query: 271 LMYTLFLTGRCDYLLGQNPPAIPSLPVFRVYCMVSKAQFVIDWHNYAYSIMAMTLEPDHM 450
+ Y F R D + QNPP++P+L ++ + A+F++DWHN+ Y+++ ++ H+
Sbjct: 96 IWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASWLRGAKFIVDWHNFGYTLLGLSHGRSHI 155
Query: 451 LVRM 462
+V++
Sbjct: 156 IVKI 159
>06_03_0492 -
21386587-21386700,21387471-21387599,21387715-21387790,
21387898-21387950,21388034-21388095,21388164-21388274,
21388361-21388527,21388804-21388869,21389416-21389505,
21389592-21389740,21390182-21390316,21390399-21390454,
21390630-21390663,21391908-21392018
Length = 450
Score = 58.4 bits (135), Expect = 3e-09
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +3
Query: 9 RKVAKVVVLGDIGRSPRMQYHALSLAN-NGLDVKIISYVETDPLPEVLNNPHITVIKLHP 185
R+ A VVLGDIGRSPRMQYH+LSLAN G++V I++ +DP + NP I + ++
Sbjct: 10 RRRAAAVVLGDIGRSPRMQYHSLSLANQGGMEVDIVANGGSDPHLLLRENPLIHIHEMKS 69
Query: 186 FEL 194
+L
Sbjct: 70 VQL 72
Score = 50.8 bits (116), Expect = 6e-07
Identities = 18/64 (28%), Positives = 39/64 (60%)
Frame = +1
Query: 271 LMYTLFLTGRCDYLLGQNPPAIPSLPVFRVYCMVSKAQFVIDWHNYAYSIMAMTLEPDHM 450
+ Y F R D + QNPP++P+L ++ + A+ ++DWHN+ Y+++ ++ H+
Sbjct: 96 IWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASGLRGAKSIVDWHNFGYTLLGLSHGRSHI 155
Query: 451 LVRM 462
+V++
Sbjct: 156 IVKI 159
>12_02_0115 -
13809015-13809068,13809530-13809637,13811004-13811114,
13811891-13811988,13813448-13813563,13814201-13814433,
13816015-13816212,13820448-13820572,13820700-13820787,
13822227-13822332,13823243-13823331,13823427-13823570,
13824174-13824266,13824442-13824508,13825251-13825387,
13825471-13825566,13826322-13826600
Length = 713
Score = 27.9 bits (59), Expect = 4.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 363 IHTKDWQGWYGGW 325
I T+DW GWY W
Sbjct: 294 IWTEDWDGWYADW 306
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = +2
Query: 314 WARTHPPYH--PCQSFVC 361
WARTH PY P Q F C
Sbjct: 496 WARTHQPYRYIPVQEFAC 513
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 144 VLNNPHITVIKLHPFELKWG 203
VLN P TV LHPF +K+G
Sbjct: 146 VLNLPGCTVPSLHPFAIKFG 165
>10_03_0041 +
7314749-7315012,7315111-7316157,7317592-7317681,
7318291-7318332
Length = 480
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 290 LLEGATICWARTHPPYHPCQ 349
LL G T + H PYHPC+
Sbjct: 454 LLFGTTASTRQVHKPYHPCR 473
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 448 CGPVQESWPLSSMHSCANRSQT 383
C P+ SW +SSM SC+ ++
Sbjct: 563 CCPISNSWAMSSMLSCSGYDES 584
>09_04_0381 +
17128437-17128655,17129250-17129331,17129409-17129564,
17129646-17130431,17130743-17131094,17131467-17131548,
17131756-17131833,17132041-17132055
Length = 589
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 113 FIRRDRPTP*SPKQPAYYRHKTSSFRTEMGPCSTQIHFPISVRKDEVYDG 262
FIR D P SP+ P Y RH++S F + G S ++ P++ + + Y G
Sbjct: 214 FIRSD-VFP-SPRTPNYRRHRSSVFGYQKGWSSERV--PLASKGNRRYPG 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,452,798
Number of Sequences: 37544
Number of extensions: 354809
Number of successful extensions: 738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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