Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10555X
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)                    29   2.6  
SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_17357| Best HMM Match : IMS (HMM E-Value=0)                         27   6.1  
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               27   6.1  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)
          Length = 804

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 374 ETMQYTRKTGKDGMAGGFWPNK*SHLPVRNRVYIKLTLRHKLHPFELKWGNV 219
           +T+   +K  K+G+  G W N  SH     R+  +L+L +K++  +L W  V
Sbjct: 727 QTLSAFQKCNKEGLVRGVWRNH-SHEKRGVRLVAELSLEYKIYDPQL-WNTV 776


>SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 260 RHKLHPFELKWGNVFEYYRAPFQ 192
           RH+L P  L+ G +F Y R+PF+
Sbjct: 325 RHRLVPLVLQKGEMFRYDRSPFE 347


>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
          Length = 990

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 392 ITNWAFETMQYTRKTGKDGMAGGFWPNK*SHLPVRNRVYIKLTL 261
           ++ W  E  Q+T    KD ++ G  PNK S   V  RV + + +
Sbjct: 179 LSTWGAEFKQFTANLIKDRVSKGIGPNKRSGPGVYGRVIMHIDM 222


>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 78  SLANNGLDVKIISYV---ETDPLPEVLNNPHITVIKLHPFELKWG 203
           SL  N LD    ++V    TDPL +++N P    + + P ++ WG
Sbjct: 280 SLGRNTLDQLYANHVGRLNTDPLTQLMNGPIKKKLGIIPNDVIWG 324


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 213 LKYISPFQFERMKF---MTECKLNVYPIPY-WKVR 305
           L   SP  FER+ F   ++ECK   YPI Y W+ R
Sbjct: 864 LTSFSP-DFERLMFEQPLSECKFEEYPIDYSWQQR 897


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,505,980
Number of Sequences: 59808
Number of extensions: 403908
Number of successful extensions: 872
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)