Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10555X
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    64   7e-11
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p...    27   5.3  
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p...    27   5.3  
U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine rece...    27   5.3  
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    27   9.3  
AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical...    27   9.3  
AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical...    27   9.3  
AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical...    27   9.3  

>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = +3

Query: 9   RKVAKVVVLGDIGRSPRMQYHALSLANNGLDVKIISYVETDPLPEVLNNPHITVIKLHP 185
           R  A VVVLGD+GRSPRM  HA  LA+ G DVK+I + ++ P  +++N+P I ++ + P
Sbjct: 12  RSEAAVVVLGDVGRSPRMCNHAKMLADEGFDVKLIGFFDSIPGEQIMNHPRIKIVGIPP 70



 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = +1

Query: 310 LLGQNPPAIPSLPVFRVYCMVSKAQFVIDWHNYAYSIM 423
           +L QNPPA+P++ V  ++ +   A+F IDWHNY YSI+
Sbjct: 111 ILMQNPPALPTMIVCFMFSIFKFAKFSIDWHNYMYSIL 148


>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
            protein F30A10.10 protein.
          Length = 1262

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 237  FERMKFMTECKLNVYPIPYWKVRLFVGPEPTRHTILASLSCVLHGFKGPVCDRLAQLCI- 413
            FE+++F +E + +   I + + RL V PE   H  +    C        VCD+  Q+ + 
Sbjct: 919  FEKIEFNSELRCSHGGINFNQFRLSVSPEEWAHLKVYFDECYEVKCSDDVCDQCRQMEVD 978

Query: 414  LDNGHDS*TG 443
              NG ++  G
Sbjct: 979  AQNGSENMRG 988


>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
            protein F30A10.10 protein.
          Length = 1262

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 237  FERMKFMTECKLNVYPIPYWKVRLFVGPEPTRHTILASLSCVLHGFKGPVCDRLAQLCI- 413
            FE+++F +E + +   I + + RL V PE   H  +    C        VCD+  Q+ + 
Sbjct: 919  FEKIEFNSELRCSHGGINFNQFRLSVSPEEWAHLKVYFDECYEVKCSDDVCDQCRQMEVD 978

Query: 414  LDNGHDS*TG 443
              NG ++  G
Sbjct: 979  AQNGSENMRG 988


>U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein51 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 343 LPVFRVYCMVSKAQFVIDWHNYAYSIM 423
           LP++ V+C+   A ++  W NY +S++
Sbjct: 71  LPIWAVHCVGFAATYLNIWSNYLFSLL 97


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 459 SHKHVVRFKSHGHYRVCIVVP---IDHKLGL*NHAIHTKDWQGWYGGWVL 319
           S +  VR K    +RVC+VVP   ++    +    + +K    W GGWV+
Sbjct: 347 SVQRYVRLKKLAFWRVCLVVPLLSLEAIRFVVFAGLPSKPRNFWSGGWVI 396


>AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7c protein.
          Length = 936

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 207 VVLKYISPFQFERMKFMTECKLNVYPIPYW 296
           ++   ++ F  + MKF TE  +N YP+  W
Sbjct: 298 IIFAIMTTFTIKFMKFKTENGINQYPVIDW 327


>AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7b protein.
          Length = 797

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 207 VVLKYISPFQFERMKFMTECKLNVYPIPYW 296
           ++   ++ F  + MKF TE  +N YP+  W
Sbjct: 282 IIFAIMTTFTIKFMKFKTENGINQYPVIDW 311


>AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7a protein.
          Length = 833

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 207 VVLKYISPFQFERMKFMTECKLNVYPIPYW 296
           ++   ++ F  + MKF TE  +N YP+  W
Sbjct: 298 IIFAIMTTFTIKFMKFKTENGINQYPVIDW 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,822,336
Number of Sequences: 27780
Number of extensions: 296952
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)