Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10555X
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16570.1 68414.m01986 glycosyl transferase family 1 protein c...    58   4e-09
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    28   2.8  
At3g27480.1 68416.m03436 DC1 domain-containing protein contains ...    27   8.7  

>At1g16570.1 68414.m01986 glycosyl transferase family 1 protein
           contains similarity to mannosyltransferase GI:1800223
           from Dictyostelium discoideum; contains Pfam glycosyl
           transferase, group 1 family protein domain PF00534
          Length = 465

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
 Frame = +3

Query: 18  AKVVVLGDIGRSPRMQYHALSLANN-GLDVKIISYVETDPLPEVLNNPHITVIKL-HPFE 191
           A VVVLGD+GRSPRMQYHALSLA      V I++Y  + P   VLN+P I +  +  P  
Sbjct: 7   ACVVVLGDLGRSPRMQYHALSLARQASFQVDIVAYGGSIPHEAVLNHPSIHIHTMAQPRF 66

Query: 192 LKWGPVVL 215
           +++ P +L
Sbjct: 67  IQYFPKIL 74



 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 22/58 (37%), Positives = 39/58 (67%)
 Frame = +1

Query: 304 DYLLGQNPPAIPSLPVFRVYCMVSKAQFVIDWHNYAYSIMAMTLEPDHMLVRMARSTE 477
           D  L QNPP++P+L   +      +A FV+DWHN+ Y+++A++L  +++LV + R +E
Sbjct: 102 DIFLVQNPPSVPTLIAVKWASSWRRAAFVVDWHNFGYTLLALSLGRNNLLVSLYRWSE 159


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 325 PPAIPSLPVFRVY---CMVSKAQFVIDWHN 405
           PP IP+ P+ R Y     VS A FV  +HN
Sbjct: 60  PPLIPTFPIGRFYNHQVRVSAADFVPSYHN 89


>At3g27480.1 68416.m03436 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 604

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 477 FSASSHSHKHVVRFKSHGHYRVCIVVPIDH 388
           F   SH H  +     HGH++ C    IDH
Sbjct: 483 FIHGSHPHPLLYLKLQHGHFKTCQSCGIDH 512


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,117,399
Number of Sequences: 28952
Number of extensions: 277195
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)