Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10553
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 167 1e-42
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 95 6e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 85 6e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 74 2e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 6e-14
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 49 7e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 48 1e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 5e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 41 1e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.4
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 167 bits (406), Expect = 1e-42
Identities = 75/84 (89%), Positives = 81/84 (96%)
Frame = +2
Query: 254 DLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 433
DLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLST
Sbjct: 292 DLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLST 351
Query: 434 FQQMWISKEEYDESGPGIVHRKCF 505
FQQMWISK+EYDESGPGIV+RKCF
Sbjct: 352 FQQMWISKQEYDESGPGIVYRKCF 375
Score = 156 bits (378), Expect = 3e-39
Identities = 73/84 (86%), Positives = 77/84 (91%)
Frame = +3
Query: 3 IVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 182
IVRDIKEKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS L
Sbjct: 208 IVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSAL 267
Query: 183 GMESCGIHETVYNSIMKCDVDIRK 254
G+E+ GIHE YNSIMKCDVDIRK
Sbjct: 268 GLENAGIHEATYNSIMKCDVDIRK 291
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 95.5 bits (227), Expect = 6e-21
Identities = 41/83 (49%), Positives = 59/83 (71%)
Frame = +3
Query: 6 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 185
VR++KEKLCYV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G
Sbjct: 209 VREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVG 268
Query: 186 MESCGIHETVYNSIMKCDVDIRK 254
E G+ E ++++I DVDIRK
Sbjct: 269 SEQPGLSEFIFDTIQAADVDIRK 291
Score = 58.4 bits (135), Expect = 8e-10
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = +2
Query: 257 LYANTVMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWI 403
LY V+SGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 404 GGSILAS-LSTFQQMWISKEEYDESG 478
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 85.4 bits (202), Expect = 6e-18
Identities = 38/83 (45%), Positives = 52/83 (62%)
Frame = +3
Query: 3 IVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 182
IVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +
Sbjct: 213 IVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMM 272
Query: 183 GMESCGIHETVYNSIMKCDVDIR 251
G E+ G+H ++ SI+ D+D+R
Sbjct: 273 GSEASGLHIQLFKSILLSDIDLR 295
Score = 79.4 bits (187), Expect = 4e-16
Identities = 36/83 (43%), Positives = 58/83 (69%)
Frame = +2
Query: 257 LYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTF 436
LY+N V+SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 437 QQMWISKEEYDESGPGIVHRKCF 505
+++ I+ EEY ++ ++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 74.1 bits (174), Expect = 2e-14
Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 6/88 (6%)
Frame = +2
Query: 257 LYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASL 427
L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 428 STFQQMWISKEEYDESGP---GIVHRKC 502
TF Q+WIS++EY+E G ++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 34.3 bits (75), Expect(2) = 4e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 69 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 173
++ +T E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 24.2 bits (50), Expect(2) = 4e-04
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 198 GIHETVYNSIMKCDVDIR 251
GI + N I +CDVDIR
Sbjct: 326 GIPQLFQNCISECDVDIR 343
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.1 bits (169), Expect = 6e-14
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +2
Query: 257 LYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYSVWIGGSILASLS 430
L N V++GGT++ PG+++R+Q E+ LA S I + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 431 TFQQMWISKEEYDESG 478
FQ +W+SK+EYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 54.0 bits (124), Expect = 2e-08
Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Frame = +3
Query: 69 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYN 221
A AS+ K +E PDG G ERFR E LF PSF S G+HE VY
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 222 SIMKCDVDIR 251
SI+ CD ++R
Sbjct: 331 SILACDSELR 340
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 48.8 bits (111), Expect = 7e-07
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Frame = +3
Query: 3 IVRDIKEKLCYVALDFEQEMATAAAS--TSLEKSYELPD------------------GQV 122
IV +IKE +CYV+ +F+++M + LE Y LPD QV
Sbjct: 214 IVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQV 273
Query: 123 ITIGNERFRCPEALFQPSFLGMESCGIHETVYNSI 227
+ + NERF PE LF PS + + GI E V S+
Sbjct: 274 LNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
Score = 45.2 bits (102), Expect = 8e-06
Identities = 25/81 (30%), Positives = 39/81 (48%)
Frame = +2
Query: 257 LYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTF 436
L N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 437 QQMWISKEEYDESGPGIVHRK 499
I++ EY E G I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Frame = +2
Query: 257 LYANTVMSGGTTMYPGIADRMQKEITALAPSTIK--------------IKIIAPPERKYS 394
LY N V+SGG+T++ +R+Q+++ + I + +I+ ++ +
Sbjct: 326 LYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNA 385
Query: 395 VWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 496
VW GGS+LA F +K +Y+E G I R
Sbjct: 386 VWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 35.9 bits (79), Expect = 0.005
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +3
Query: 15 IKEKLCYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 182
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 183 GME-SCGIHETVYNSIMKCDVDIRK 254
+ + E V N + +D+RK
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRK 324
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.0 bits (104), Expect = 5e-06
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +2
Query: 257 LYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTF 436
L +N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 437 QQMWISKEEYDESGP 481
+ +++EEY E GP
Sbjct: 694 KAAKVTREEYLEKGP 708
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 138 ERFRCPEALFQPSFLGMESCGIHETVYNSIMK 233
E+ R PE +F PS +G++ GI E + SI++
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE-IMRSILQ 624
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +2
Query: 254 DLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILAS 424
+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 528 NLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNR 587
Query: 425 LSTFQQMWISKEEYDESGPGIVHRK 499
+ ++WI ++ G ++ K
Sbjct: 588 IRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +2
Query: 398 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 499
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 323 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 433
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 349 DHQDQDHRSPREEVLRMDRWIHPG 420
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,877
Number of Sequences: 5004
Number of extensions: 42724
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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