Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10553
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             138   6e-35
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.21 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.84 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.0  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  138 bits (333), Expect = 6e-35
 Identities = 64/67 (95%), Positives = 67/67 (100%)
 Frame = +2

Query: 254 DLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 433
           DLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPE+KYSVWIGGSILASLST
Sbjct: 67  DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLST 126

Query: 434 FQQMWIS 454
           FQQMWIS
Sbjct: 127 FQQMWIS 133



 Score =  136 bits (330), Expect = 1e-34
 Identities = 62/66 (93%), Positives = 65/66 (98%)
 Frame = +3

Query: 57  EMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKC 236
           EMATAA+S+SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME+CGIHET YNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 237 DVDIRK 254
           DVDIRK
Sbjct: 61  DVDIRK 66


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 265 QHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRM 399
           +H H++ +HH    +    +  HRP     Q Q  +  R+E  R+
Sbjct: 140 RHHHLQNHHH--HLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRL 182


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 627 DGVRLDVQFSGITRYNVLTVAFRTRTSTTPHSTGVTRAR 511
           D  +LD  F   T+ N + ++ R++ STT    G T A+
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQ 392


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -1

Query: 250 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 161
           R     F+  L T    W+ +++I RK  W R
Sbjct: 18  RSENDPFLKRLITGDEKWVVYNNIKRKRSWSR 49


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -1

Query: 250 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 161
           R     F+  L T    W+ +++I RK  W R
Sbjct: 139 RNENDPFLKRLITGDEKWVVYNNIKRKRSWSR 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,726
Number of Sequences: 438
Number of extensions: 3319
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)