Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10552
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    28   1.6  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    27   2.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   8.4  

>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 558 DESTALTMPVGQLREEVTVESNQILTTQ 641
           ++S AL + V QLREEV    NQ+L  Q
Sbjct: 304 EQSKALRILVSQLREEVICLKNQLLAHQ 331


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 170 SMRIISRSGDQVSSAEIGENLVLQVDV 250
           S  I++  GD+V++ EIG+ +V+  D+
Sbjct: 99  SCGIVAEKGDEVNNLEIGDRVVIAFDL 125


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -3

Query: 696 HLLHQYHHAAEPLVTVRVAA--SLVFGSIRRSPPLEVDLPASSKRCFRRSLLVF 541
           +L H  +   EPL    +    S VF S RR P    DL  SSK C  + L  F
Sbjct: 81  YLYHSTNSQLEPLEVFHLHKLHSAVFTS-RRDPSFADDLFESSKPCLNQLLSYF 133


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 13  NANSSETGNINHKSIPHQMHIQNW*TKRNSCIQ 111
           N N S T +++   +PH + + N+ T  +SC Q
Sbjct: 292 NINES-TNHVDSSYLPHPIQLSNYFTLPSSCAQ 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,225
Number of Sequences: 5004
Number of extensions: 61164
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)