Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10552
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0366 + 22744584-22744835,22745248-22745335,22745657-227457... 34 0.13
11_06_0363 + 22724802-22725053,22725466-22725553,22725875-227259... 34 0.13
07_03_1408 - 26353389-26355191 30 1.6
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557... 29 2.9
01_01_0208 + 1780275-1781123 29 3.8
07_01_1153 - 10842259-10842390,10843348-10845315 29 5.0
07_03_0363 + 17225472-17226778,17226910-17226917,17227313-172274... 28 6.6
12_02_0668 + 21688853-21688933,21689043-21689081,21689597-216897... 28 8.8
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 28 8.8
03_02_0694 - 10448712-10448996,10449030-10449074,10449588-104496... 28 8.8
>11_06_0366 +
22744584-22744835,22745248-22745335,22745657-22745702,
22746159-22746345,22746436-22746507,22746597-22746728
Length = 258
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 388 ERSEDGSALRAAFNAFKFPSSDN---IRFQCNIRVCFGKC 498
E E AL AA FK PSS+N I CN R C G C
Sbjct: 134 ESKERSEALSAAAKKFKLPSSENLGEIAEHCNERKCAGHC 173
>11_06_0363 +
22724802-22725053,22725466-22725553,22725875-22725920,
22726377-22726563,22726654-22726725,22726815-22726946
Length = 258
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 388 ERSEDGSALRAAFNAFKFPSSDN---IRFQCNIRVCFGKC 498
E E AL AA FK PSS+N I CN R C G C
Sbjct: 134 ESKERSEALSAAAKKFKLPSSENLGEIAEHCNERKCAGHC 173
>07_03_1408 - 26353389-26355191
Length = 600
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/66 (18%), Positives = 35/66 (53%)
Frame = +3
Query: 522 DAYGKRRKREVTDESTALTMPVGQLREEVTVESNQILTTQRREPSQVARQRDGTGAEGAS 701
DA + RKR++ D+ + ++PV +++ E + E + +++++ + + G+G
Sbjct: 478 DAADEGRKRKIEDDDASASVPVKKIKVEESAEEVEGEKSEKKKKKKKDKGEQGSGDAEVK 537
Query: 702 QSSGEV 719
+ ++
Sbjct: 538 EEKADI 543
>12_02_1169 -
26655170-26655332,26655429-26655504,26655603-26655715,
26655808-26655913,26656001-26656235,26656415-26656573,
26657279-26657377,26657472-26657568,26657650-26657768,
26657860-26658000,26658100-26658184,26658287-26658488,
26659274-26659379
Length = 566
Score = 29.5 bits (63), Expect = 2.9
Identities = 30/117 (25%), Positives = 50/117 (42%)
Frame = -3
Query: 645 VAASLVFGSIRRSPPLEVDLPASSKRCFRRSLLVFFVYRMRPNRDSNRYAFSKADANVAL 466
VA S++ +R +PP EV LP+S + FR S P D+N S ++
Sbjct: 348 VAVSILI--LRYAPPDEVPLPSSLEASFRLSQEYDEEKVRGPPVDANHEQLSSVVESI-- 403
Query: 465 ESYIVTTGELESIESGTQRAAVLASFPFTENSGVLSTTVLVCYKILIFYVS*YFTCF 295
++ + S+E +R A + S + GV+ T + L F + +F F
Sbjct: 404 NDTLIEKKQDTSVEESKRRKAAVCSIS-SVCVGVVVLTTSASFTFLPFLLRCFFCVF 459
>01_01_0208 + 1780275-1781123
Length = 282
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 450 TTGELESIESGTQRAAVLASFPFTENSGVLSTTVLVCY 337
T GEL + T + + P NS +++ T + CY
Sbjct: 245 TIGELSRADQSTVTSTIRQEIPEASNSSIITITTISCY 282
>07_01_1153 - 10842259-10842390,10843348-10845315
Length = 699
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Frame = -3
Query: 513 DSNRYAFSK-ADANVALESYIVTTGELESIESGTQRAAVLASFPF------TENSGVLST 355
D N++A+S + AN+ ++ +T+G L + +GT + A +P + N VLS
Sbjct: 26 DDNQFAYSGFSGANLTMDGATITSGGLLELTNGTVQQKGHAFYPVPLRFVRSPNGSVLSF 85
Query: 354 TVLVCYKILIFY 319
+ + IL Y
Sbjct: 86 SASFVFAILSVY 97
>07_03_0363 +
17225472-17226778,17226910-17226917,17227313-17227488,
17227822-17227882,17227955-17228053,17228155-17228249,
17228411-17228482,17228668-17228735,17228934-17229390,
17229486-17229596
Length = 817
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 585 VGQLREEVTVESNQILTTQRREPSQVARQRDGTGAEGASQSSGEV 719
+G ++ + S +REP +R RDG G++G S++S V
Sbjct: 403 LGSVQRKRMARSRGGSQASQREPRFRSRMRDGEGSQGKSEASAIV 447
>12_02_0668 +
21688853-21688933,21689043-21689081,21689597-21689794,
21690288-21690341,21690772-21690825,21691544-21691597,
21691694-21691765,21691860-21691949,21692132-21692188,
21692449-21692514
Length = 254
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 522 DAYGKRRKREVTDESTALTMPVGQLREEVTVESNQILTTQRREPSQVARQRDGTGAEGAS 701
D + K E++D TAL + QLR + ++ TT +++ V+ G + A+
Sbjct: 134 DTQVTKYKSELSDIKTALNSEIEQLRSDF----QELRTTLKKQQEDVSNSLKNLGLQDAT 189
Query: 702 QSSG 713
+ G
Sbjct: 190 DNDG 193
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 645 REPSQVARQRDGTGAEGASQSS 710
R+P + R+RDG G++G S SS
Sbjct: 128 RQPHRSRRERDGNGSDGKSGSS 149
>03_02_0694 -
10448712-10448996,10449030-10449074,10449588-10449647,
10449817-10449890,10451056-10451149,10451851-10452023,
10452526-10452598
Length = 267
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 378 ENSGVLSTTVLVCYKILIFYVS 313
+++G +STTV +C I++FY +
Sbjct: 134 QSNGTISTTVFLCASIVLFYTN 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,149,351
Number of Sequences: 37544
Number of extensions: 430823
Number of successful extensions: 1369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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