Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10552
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6759| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-05)                  32   0.55 
SB_49370| Best HMM Match : rve (HMM E-Value=0.0062)                    31   0.96 
SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               29   3.9  
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)                   29   5.1  
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)                   28   6.8  
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)                      28   6.8  
SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_30855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_6759| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-05)
          Length = 304

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 690 LHQYHHAAEPLVTVRVAASLVFGSIRRSPPLE-VDLPASSKRCFRRSLLVFFVYRMRPNR 514
           LH  ++    +  V++A  L +  +R SPPL  + LP      + R  L  F YR+ P +
Sbjct: 138 LHMRYNTLVTMKRVKLALGLCWADLRESPPLSLLRLPPLPIPWYARYELEGFPYRISPQK 197

Query: 513 DSNR 502
            + R
Sbjct: 198 RNQR 201


>SB_49370| Best HMM Match : rve (HMM E-Value=0.0062)
          Length = 192

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -3

Query: 225 SPISAELTWSPEREIILMEQVGGGPVLAIVPAVVNMDTLNARV 97
           +P++ +     EREI+ ++ + GGPV  + PAV   + LNAR+
Sbjct: 91  NPVAEKAVQELEREILQLDPL-GGPVSEVAPAVATAN-LNARI 131


>SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +3

Query: 540 RKREVTDESTALTMPVGQLREEVTVESNQILTTQRREPSQVARQRDGTGAEGASQSSGEV 719
           R  ++ D S    +  GQ R+E   E +   T  R EPS+   + D T +   SQ+SG  
Sbjct: 400 RSLDIGDASRRPHVSAGQKRDETESEMSCKATGVRGEPSENGEEED-TSSSKESQASGGK 458

Query: 720 CVS 728
            VS
Sbjct: 459 SVS 461


>SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1173

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 363 LSTTVLVCYKILIFYVS*YFTCFCNAAACKTSVDTRC 253
           L T+V + ++ +I  +   F CFCN A   +SV+ RC
Sbjct: 445 LGTSVSLDHRSIIRKLFVVFLCFCNTAILISSVNFRC 481


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +3

Query: 516 GSDAYGKRRKREVTDESTALTMPVGQLREEVTVESNQILTTQRREPSQVARQRDGTGAEG 695
           G        KRE + ++   T P+         E+N+++T  R  PSQ       +G+ G
Sbjct: 798 GGSTQSHAHKRESSPKALLPTPPLSHALSPYVKETNRMITPTRHAPSQNKTAAQSSGSPG 857


>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 249 TSTCKTRFSPISAELTWSPEREIILMEQVGGGP 151
           ++TCK  F    A +TW    E+  M  VGG P
Sbjct: 192 STTCKYHFQTEQAPVTWKTVMEMRRMMAVGGRP 224


>SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)
          Length = 544

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -3

Query: 225 SPISAELTWSPEREIILMEQVGGGPVLAIVPAVVNMDTLNARV 97
           +P++ +     EREI+ ++ + GGPV  +  AVV  + LNAR+
Sbjct: 397 NPVAEKAVQELEREILQLDPL-GGPVSEVALAVVTAN-LNARI 437


>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 1/142 (0%)
 Frame = +1

Query: 7   SSNANSSETGNINHKSIPHQMHIQNW*TKRNSCIQCVHVNNSRHNRQYRPSAYLLHENNF 186
           S +A S++T + N  +  HQ    N         Q +H N S  ++Q  PS   +H N  
Sbjct: 486 SQSALSNQTMHSNRSTPSHQKSPSN---------QTMHSNRSTPSKQSSPSNQTMHSNRS 536

Query: 187 TFWRPSQFRRNRREPRFTS*CPTSSIYGGFARSCVAKT-SEVSTNVENEYLVTDEDGCAK 363
           T    S           ++    SS       SC   T + +++ +ENE ++  E    +
Sbjct: 537 TPSNQSTPSNQTMHSNRSTPSNQSSPSNQRTTSCGLTTRNRITSTIENEKILKRESDVER 596

Query: 364 DPAIFGEWERSEDGSALRAAFN 429
                  +E S+        FN
Sbjct: 597 PIDSSMVYESSQSSYGTSGHFN 618


>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -3

Query: 303 TCFCNAAACKTSVDT-RCWTSTCK 235
           TC C A  CK  V T +C   TCK
Sbjct: 26  TCKCKAQTCKGKVQTCKCKAQTCK 49


>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
          Length = 553

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 124 NNSRHNRQY-RPSAYLLHENNFTFWRPSQFRRNRREPRFTS*CPTSSIYGGFARSC 288
           NNSRHN  Y R + Y  + N ++  RP  +       R+T  C    + G +ARSC
Sbjct: 500 NNSRHNEVYERVTHYHDYRNQYSH-RPPAYGN-----RYTGLCFHCGMRGHWARSC 549


>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
          Length = 341

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -3

Query: 303 TCFCNAAACKTSVDT-RCWTSTCK 235
           TC C A  CK  V T +C   TCK
Sbjct: 26  TCKCKAQTCKGKVQTCKCKAQTCK 49


>SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = +2

Query: 5   VLVMQTHLKLVTSTTKAFHIKCIYKTGEQNVTLAFNVSMLTTAGTIANTGPPPTCSMRII 184
           VL M     LVT +T++   K +Y    Q  TLAFN S    A  I N  P    S+  +
Sbjct: 233 VLYMLNLPDLVTRSTRSTRRKELYYNQLQANTLAFNYSFFARAIRIWNLLPNDVKSINTL 292

Query: 185 SR 190
           ++
Sbjct: 293 AK 294


>SB_30855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 587 RSTSRGGDRRIEPNTNDAATRTVTSGSAA*WYWCRRCQSEQWRSVRV 727
           R +S+    RI+  +     R V SG+ A WYW R   S +  SVR+
Sbjct: 24  RFSSKRAGVRIQVRSTSDFFRGVKSGAVAQWYWLR--FSSKRASVRI 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,387,609
Number of Sequences: 59808
Number of extensions: 494881
Number of successful extensions: 1842
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1838
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)