Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10552
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.97 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 591  QLREEVTVESNQILTTQRREPSQVARQRDGTGAEGASQSSG 713
            Q +++   +  Q    Q+++    AR+R+G GA  A  S+G
Sbjct: 1212 QQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAG 1252


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 572 FDDAGRSTSRGGDRRIEPNTND 637
           FD+ GRS  +G    I+ N ND
Sbjct: 20  FDEGGRSYGKGRGFIIQNNNND 41


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 593 TSRGGDRRIEPNTNDAATRTVTSGSA 670
           T+RGG  ++ P  N A  +    GSA
Sbjct: 101 TNRGGSPKLTPYPNWAQNKAGACGSA 126


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 91  KRNSCIQCVHVNNSRHNRQ 147
           +RNSC+       S+HN Q
Sbjct: 375 RRNSCLGSTETYYSKHNTQ 393


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 77  KTGEQNVTLAFNVSMLTTAGTIANT 151
           K   Q++T   NVS LTT  T  N+
Sbjct: 711 KESTQSLTTTGNVSYLTTNNTSNNS 735


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 10  SNANSSETGNINHKSIPHQMHIQNW*TKRNSCIQCVHVNNSRHNRQYRPSAYLLHEN 180
           S+A++S           H M + +    R+  I   H +   H   Y+ S YL++EN
Sbjct: 37  SSASNSPDHYERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQVLYQQSPYLMYEN 93


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 149 YWRLCLLLL 123
           YW LC+LLL
Sbjct: 90  YWDLCMLLL 98


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 149 YWRLCLLLL 123
           YW LC+LLL
Sbjct: 90  YWDLCMLLL 98


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 149 YWRLCLLLL 123
           YW LC+LLL
Sbjct: 90  YWDLCMLLL 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,337
Number of Sequences: 438
Number of extensions: 4388
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)