Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10552
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77800.1 68414.m09059 PHD finger family protein contains Pfam...    30   1.4  
At4g04545.1 68417.m00665 Ulp1 protease family protein contains P...    29   3.2  
At5g52630.1 68418.m06534 pentatricopeptide (PPR) repeat-containi...    29   4.2  
At5g46080.1 68418.m05666 protein kinase family protein contains ...    28   5.6  
At5g32410.2 68418.m03816 hypothetical protein                          28   5.6  
At5g06805.1 68418.m00769 reverse transcriptase-related low simil...    27   9.7  
At5g06800.1 68418.m00768 myb family transcription factor contain...    27   9.7  
At3g19600.1 68416.m02485 NLI interacting factor (NIF) family pro...    27   9.7  
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,...    27   9.7  
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,...    27   9.7  
At2g04970.1 68415.m00518 hypothetical protein similar to At2g152...    27   9.7  

>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 1423

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 294 CNAAACKTSVDTRCWTSTCKTRFSPISA 211
           CN    K+    RC   TC+T F PI A
Sbjct: 401 CNLCKVKSGACIRCCNGTCRTSFHPICA 428


>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 882

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 513 RGSDAYGKRRKREVTDESTA-LTMPVGQLREEVTVESNQILTTQ 641
           RG DA  KRRK++ + +  A  T P+ +++E+  V S +I  T+
Sbjct: 475 RGDDASQKRRKKKSSSDMDAQSTRPLKRVKEKDQVSSTKIGNTE 518


>At5g52630.1 68418.m06534 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 588

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +1

Query: 322 ENEYLVTDEDGCAKDPAIFGEWERSEDGSALRAAFNAFKFPSSDNIRFQCNIRVCFGKC 498
           +  Y++ + DG  K+  I    ER      L  AF    FP+   IR   N+RVC G C
Sbjct: 500 DTSYVLREVDGDEKNQTIRYHSER------LAIAFGLITFPADRPIRVMKNLRVC-GDC 551


>At5g46080.1 68418.m05666 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 332

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 456 YTIPMQHSRLLWKMRTGYCRGSDAYG 533
           + IP++ S +   +  GYC+ SD YG
Sbjct: 221 FLIPIEKSGIFGYIEEGYCKESDVYG 246


>At5g32410.2 68418.m03816 hypothetical protein
          Length = 123

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 720 TLLHCSDWHLLHQYHHAAEPLVTVRVAASLVFGSIRRSPPLE 595
           TL+H S      ++HH + PL T+     L   +  RSPPL+
Sbjct: 26  TLVHHSTPWSSRRHHHFSPPLDTLVEYHHLYHSTFTRSPPLD 67


>At5g06805.1 68418.m00769 reverse transcriptase-related low
           similarity to reverse transcriptase [Arabidopsis
           thaliana] GI:976278
          Length = 594

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
 Frame = +3

Query: 489 WKMRTGYCRGSDAYGKRR----KREVTDESTALTMPVGQLREEVTVESNQILTTQRREPS 656
           WK R GY  G D+  + R    K  V +   A     G  RE+V VE  +++  ++    
Sbjct: 444 WKWRCGYVFGEDSRCRDRVKFLKSAVAEVEAAHLAANGDAREDVLVE--RMIAWRKPAEG 501

Query: 657 QVARQRDGT--GAEGASQSSGEV 719
            V    DG   G  G + + G +
Sbjct: 502 WVTMNTDGASHGNPGQATAGGVI 524


>At5g06800.1 68418.m00768 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 375

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 181 NFTFWRPSQFRRNRREPRFTS*CPTSSIYGG-FARSCVAKT 300
           NFT    SQ +  +  PRF+S  P+ SI+GG  A +CV KT
Sbjct: 157 NFT---SSQHQPKQSHPRFSS-PPSFSIHGGSMAPNCVNKT 193


>At3g19600.1 68416.m02485 NLI interacting factor (NIF) family
           protein low similarity to CTD phosphatase [Xenopus
           laevis] GI:13487713; contains Pfam profile PF03031: NLI
           interacting factor
          Length = 601

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 611 RRIEPNTNDAATRTVTSGSAA*WYWC 688
           R+IEP  N++++   +S S   WY C
Sbjct: 310 RKIEPTINESSSSLSSSSSCGHWYIC 335


>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 540 RKREVTDESTALTMPVGQLREEVTVESNQILTTQRREPSQVARQRDGT 683
           R   V+ +  A + P+ + +E  T  S++  T +RR  + V  QR+ +
Sbjct: 142 RSLSVSFQGEAFSFPISKKKETATPVSHRKCTPERRRATPVRDQRENS 189


>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 627

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 540 RKREVTDESTALTMPVGQLREEVTVESNQILTTQRREPSQVARQRDGT 683
           R   V+ +  A + P+ + +E  T  S++  T +RR  + V  QR+ +
Sbjct: 142 RSLSVSFQGEAFSFPISKKKETATPVSHRKCTPERRRATPVRDQRENS 189


>At2g04970.1 68415.m00518 hypothetical protein similar to At2g15200,
           At1g32830, At2g14140, At3g30450, At4g03990, At5g34895,
           At3g47270, At2g02200
          Length = 808

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 531 RMRPNRDSNRYAFSKADANVALESYIVTTGELESIESGT 415
           R+  N D  R+ F+      +L  +I+TTG     ESG+
Sbjct: 79  RILTNNDELRFVFADQPMRFSLREFIITTGLPMDDESGS 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,637
Number of Sequences: 28952
Number of extensions: 331270
Number of successful extensions: 1073
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)