Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10551
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 116 9e-27
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 116 1e-26
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 116 1e-26
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 40 0.002
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 33 0.14
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 31 0.43
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 116 bits (280), Expect = 9e-27
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = +2
Query: 239 KGPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 418
KGP +PTK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPGV
Sbjct: 60 KGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGV 119
Query: 419 EVEVTIAD 442
EVEVTI+D
Sbjct: 120 EVEVTISD 127
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/58 (55%), Positives = 42/58 (72%)
Frame = +3
Query: 81 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVR 254
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVR
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVR 64
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 116 bits (279), Expect = 1e-26
Identities = 52/76 (68%), Positives = 63/76 (82%)
Frame = +2
Query: 215 SQETEAACKGPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 394
+++ + KGP +PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQIT
Sbjct: 54 AKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQIT 113
Query: 395 SINIEPGVEVEVTIAD 442
SI IEPGVEVEVTIAD
Sbjct: 114 SITIEPGVEVEVTIAD 129
Score = 67.3 bits (157), Expect = 7e-12
Identities = 31/58 (53%), Positives = 43/58 (74%)
Frame = +3
Query: 81 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVR 254
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVR 66
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 116 bits (279), Expect = 1e-26
Identities = 52/76 (68%), Positives = 63/76 (82%)
Frame = +2
Query: 215 SQETEAACKGPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 394
+++ + KGP +PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQIT
Sbjct: 51 AKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQIT 110
Query: 395 SINIEPGVEVEVTIAD 442
SI IEPGVEVEVTIAD
Sbjct: 111 SITIEPGVEVEVTIAD 126
Score = 66.5 bits (155), Expect = 1e-11
Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 4/63 (6%)
Frame = +3
Query: 78 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 245
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 246 PVR 254
PVR
Sbjct: 61 PVR 63
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 215 SQETEAACKGPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSP-SEIVKQI 391
++ T A GP PLPTK +P + F++R H+R+ID+ P ++ + +
Sbjct: 358 AKTTNAKTMGPVPLPTKRRVYCVLNSPHVHKDSRF-HFEIRTHQRLIDIMYPTAQTIDSL 416
Query: 392 TSINIEPGVEVEVTI 436
+ + GV+VEV +
Sbjct: 417 MQLQLPAGVDVEVKL 431
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 129 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPV 251
++P +IRI L S V +E C +I AK + GPV
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPV 369
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 173 CALTREGLC*PNQWSQETEAACKGPSPLPTKILRIT 280
C L EGL ++W++ A +GPSPL + R T
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSPLKQPLTRTT 190
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 31.5 bits (68), Expect = 0.43
Identities = 22/74 (29%), Positives = 26/74 (35%)
Frame = +2
Query: 146 HQDHSYFSQCALTREGLC*PNQWSQETEAACKGPSPLPTKILRITTRKTPCGEGSKTWDR 325
H S +CAL R+G +W ET C G P P IL G D
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPAMAIAVGRAFPDA 70
Query: 326 FQMRIHKRVIDLHS 367
+ID HS
Sbjct: 71 IHRLCRWHIIDGHS 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,418,625
Number of Sequences: 37544
Number of extensions: 290287
Number of successful extensions: 705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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