Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10551
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             135   2e-32
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.4  
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  29   1.8  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      28   4.1  
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  135 bits (327), Expect = 2e-32
 Identities = 62/77 (80%), Positives = 70/77 (90%)
 Frame = +2

Query: 215 SQETEAACKGPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 394
           ++E +   KGP  +PTK LRITTRKTPCGEGSKTWDR++MRIHKR+IDLHSPSEIVKQIT
Sbjct: 24  AKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRIHKRLIDLHSPSEIVKQIT 83

Query: 395 SINIEPGVEVEVTIADA 445
           SI+IEPGVEVEVTIADA
Sbjct: 84  SISIEPGVEVEVTIADA 100



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 2/31 (6%)
 Frame = +3

Query: 168 RNVRSLEKV--CADLINGAKKQKLRVKGPVR 254
           + VR+  KV  CADLI GAK++KL+VKGPVR
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVR 36


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 102 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 203
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 242 GPSPLPTKILR-ITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 418
           G  PL T+ ++ +   K P  + S TWD  Q+ ++ + I++     +   + S NI+  +
Sbjct: 780 GSHPLVTRFMKGVFVNKPPKPKYSSTWDVSQLTMYLKTIEVSESLWLKAVLKSANIDTSI 839


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -3

Query: 466 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHNFRGRV*VDHSLVDSHLK 326
           FY  L L V D    L  G+D    DLF   R    VD+SLV   +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448


>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 473 KNILLAALPTRRRWSPQP 420
           +N+++  LPT +RW P P
Sbjct: 180 RNVVIQRLPTSQRWQPYP 197


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 69  TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 191
           T N A+ ++S   + +PQA + P+H   I + SRN  ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,092,583
Number of Sequences: 59808
Number of extensions: 329761
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)