Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10551
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo...   117   4e-27
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ...   117   4e-27
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ...   117   4e-27
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ...   117   4e-27
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    42   3e-04
At1g20530.1 68414.m02558 hypothetical protein                          29   2.6  
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha...    27   7.8  
At5g26220.1 68418.m03121 ChaC-like family protein contains Pfam ...    27   7.8  

>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
           ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
          Length = 124

 Score =  117 bits (282), Expect = 4e-27
 Identities = 51/69 (73%), Positives = 61/69 (88%)
 Frame = +2

Query: 239 KGPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 418
           KGP  +PTK+L+ITTRK PCGEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGV
Sbjct: 56  KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 115

Query: 419 EVEVTIADA 445
           EVEVTIAD+
Sbjct: 116 EVEVTIADS 124



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 28/39 (71%), Positives = 36/39 (92%)
 Frame = +3

Query: 138 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVR 254
           IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVR
Sbjct: 22  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 60


>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  117 bits (282), Expect = 4e-27
 Identities = 51/69 (73%), Positives = 61/69 (88%)
 Frame = +2

Query: 239 KGPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 418
           KGP  +PTK+L+ITTRK PCGEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGV
Sbjct: 54  KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 113

Query: 419 EVEVTIADA 445
           EVEVTIAD+
Sbjct: 114 EVEVTIADS 122



 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 29/45 (64%), Positives = 39/45 (86%)
 Frame = +3

Query: 120 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVR 254
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVR
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 58


>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  117 bits (282), Expect = 4e-27
 Identities = 51/69 (73%), Positives = 61/69 (88%)
 Frame = +2

Query: 239 KGPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 418
           KGP  +PTK+L+ITTRK PCGEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGV
Sbjct: 54  KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 113

Query: 419 EVEVTIADA 445
           EVEVTIAD+
Sbjct: 114 EVEVTIADS 122



 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 29/45 (64%), Positives = 39/45 (86%)
 Frame = +3

Query: 120 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVR 254
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVR
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 58


>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
           ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
          Length = 124

 Score =  117 bits (282), Expect = 4e-27
 Identities = 51/69 (73%), Positives = 61/69 (88%)
 Frame = +2

Query: 239 KGPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 418
           KGP  +PTK+L+ITTRK PCGEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGV
Sbjct: 56  KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 115

Query: 419 EVEVTIADA 445
           EVEVTIAD+
Sbjct: 116 EVEVTIADS 124



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 28/39 (71%), Positives = 36/39 (92%)
 Frame = +3

Query: 138 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVR 254
           IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVR
Sbjct: 22  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 60


>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = +2

Query: 215 SQETEAACKGPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQI 391
           ++ T A   GP PLPTK       K+P       +  F++R H+R+ID L+  ++ +  +
Sbjct: 118 ARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSL 176

Query: 392 TSINIEPGVEVEVTI 436
             +++  GV+VEV +
Sbjct: 177 MQLDLPAGVDVEVKL 191



 Score = 31.9 bits (69), Expect = 0.27
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 81  AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPV 251
           A+ V S   I     +++P  +IRI L S  V  +E  C  +++ A+    +  GPV
Sbjct: 73  ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPV 129


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 359 GRSLSCGFASENDPRSLNLHHKEFY 285
           G   +C   S + P SLNL+H  FY
Sbjct: 106 GEGTNCDLLSGSKPESLNLNHDSFY 130


>At5g40820.1 68418.m04956 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            similar to Atr protein [Xenopus laevis] GI:11385422;
            contains Pfam profiles PF00454 Phosphatidylinositol 3-
            and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
          Length = 2702

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 165  SRNVRSLEKVCADLINGAKKQKLRVKGPVRCQ 260
            +R + SL+    D++NG K + L V+  V C+
Sbjct: 1247 ARGLMSLKDQLRDIVNGMKHENLNVRYMVACE 1278


>At5g26220.1 68418.m03121 ChaC-like family protein contains Pfam
           profile: PF04752 ChaC-like protein
          Length = 216

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 242 GPSPLPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 397
           GP+PL     +I T   PCG   +    +  ++ K + D+    E V ++ +
Sbjct: 129 GPAPLEEMARQIATASGPCGNNRE----YLFKLEKAMFDIEHEEEYVIELAN 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,472,539
Number of Sequences: 28952
Number of extensions: 218837
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)