Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10550
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    32   0.19 
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    32   0.19 
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    32   0.19 
AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin prot...    26   9.5  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 68   EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 238
            EH   SC+SG  G +C   C   +    D ISG       S   G +  +C    L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 239  GRQHCAQ 259
            GR HC+Q
Sbjct: 1250 GR-HCSQ 1255



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 65   KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 244
            KE+G   CI G  G  C  +  +G        R   +   +  RK  RC    L  +SG 
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194

Query: 245  QHC 253
            +HC
Sbjct: 1195 EHC 1197


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 68   EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 238
            EH   SC+SG  G +C   C   +    D ISG       S   G +  +C    L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 239  GRQHCAQ 259
            GR HC+Q
Sbjct: 1250 GR-HCSQ 1255



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 65   KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 244
            KE+G   CI G  G  C  +  +G        R   +   +  RK  RC    L  +SG 
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194

Query: 245  QHC 253
            +HC
Sbjct: 1195 EHC 1197


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 83   SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 187
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical
           protein E03E2.1 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 345 KVRSWSDVENG*CLASPHGVGATMAAAVNCAQCCRPLNFRSMLVQQRLCFLP 190
           K+  +  +EN   + +P G         N   C RP  F ++  QQR  F+P
Sbjct: 387 KIGKYQFLENVQIVVNPWGPHHDREIWGNDVDCFRPSRFENLTEQQRKAFMP 438


>Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical
           protein F44D12.2 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 132 QCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRR 34
           +CH+  +  PRLP ++  + C   FC + A  R
Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245


>AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin protein
           2 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 153 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 64
           L+E  DP C ++ +++P++    +E   +F
Sbjct: 68  LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,364,987
Number of Sequences: 27780
Number of extensions: 177443
Number of successful extensions: 325
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)