Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10549
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      27   6.9  
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)                    27   9.2  

>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 512 FFFFFTSHRQIY*KFKC--ILIPNKTEKVRSW 423
           FFF+F   R+++   KC  + I N T+  RSW
Sbjct: 141 FFFYFKEARRVFENRKCSVVEIINFTDITRSW 172


>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 139 RREQKLKEHGASSCISGK-RGRRCCNIWHWGSVDSISGSQL 258
           + +Q+ ++ G  +CI    +    CNIWH  ++ ++ G Q+
Sbjct: 106 KTKQECQKEGYEACIVNTIKSGTYCNIWHIFALSNVVGCQI 146


>SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)
          Length = 303

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 452 PNKTEKVRSWSDVENG*CLASPHGVGATMAAA 357
           P K +K R W D ++G C  +   +G T+AAA
Sbjct: 167 PEKLQKARDWDDWKDGLCGVA---IGYTVAAA 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,374
Number of Sequences: 59808
Number of extensions: 274982
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)