Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10548
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    91   1e-19
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    31   0.15 
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    30   0.44 
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    30   0.44 
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    30   0.44 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    29   0.59 
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    29   0.59 
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    29   0.59 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    29   0.78 
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    29   0.78 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    26   5.5  
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    26   5.5  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 61/175 (34%), Positives = 82/175 (46%), Gaps = 4/175 (2%)
 Frame = +1

Query: 256 IRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFAR 435
           +RYFPTQALNFAFKDK+K++F G   ++  + ++F             SL FVY LD+AR
Sbjct: 99  LRYFPTQALNFAFKDKFKKMF-GYKKERDGYAKWFAGNLASGGAAGAASLLFVYSLDYAR 157

Query: 436 TRLAADV--GKGDGQREFSGLGNXXXXXXXXXXXXXXXXXXXXXXK--XXXXXXXXXXXX 603
           TRLA D    K  G+R+F+GL +                                     
Sbjct: 158 TRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYD 217

Query: 604 XXRPAACCPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSIS 768
             +P      P     + S+ +   VTT +G+ SYP DT+RRRMMM SG A   S
Sbjct: 218 TLKPVVLV-GPLEGNFLASFLLGWAVTTGSGVASYPLDTIRRRMMMTSGEAVKYS 271



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = +3

Query: 498 LHQQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR 617
           ++++ ++SDGL GLYRGFG SV GI++YR  YFG YDT +
Sbjct: 181 VYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLK 220



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 212 EQGLLSFWRGNFAN 253
           E+G++S WRGN AN
Sbjct: 84  EEGVISLWRGNTAN 97


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 510 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 608
           ++KS+GL+GL+RGFG  +       +  F FY+
Sbjct: 291 LYKSEGLLGLFRGFGPRIFWTSSQSSLMFVFYE 323


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 507 QIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 626
           +I K + ++ LY GF  ++   +++ A YFG     R  L
Sbjct: 150 KIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIRNSL 189



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 412 VYPLDFARTRLAADVGKGDGQREFSGL 492
           +YPLD  +TR+   VGK D    F  L
Sbjct: 26  LYPLDVVKTRMQLSVGKSDYNGTFDCL 52



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 640 NTPIVISWAIAQTVTTVAGIIS-YPFDTVRRRMMMQSGRA 756
           N P  +++A A  V  ++ +++ YP D V+ RM +  G++
Sbjct: 5   NIPFPVTFA-AGAVAGISEVLTLYPLDVVKTRMQLSVGKS 43


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 504 QQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR 617
           + I+K +G+ G +RGFGV+      +   Y  FY+ ++
Sbjct: 149 RDIWKKEGISGFFRGFGVTALRDAPHAGLYVYFYELSK 186


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 492 RKLHQQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 626
           RK+ ++I+K +G+ G  +G G+ V    +  + Y G Y+  +  L
Sbjct: 203 RKVVRRIYKENGIFGFEKGLGLRVFASSLGLSIYLGTYEHVKSHL 247


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 490 DRRIHAGHLPYRHRRRDGYVRSRGGTRSTERWL-RRHHRRPD--YQRSNARTASSCQHRR 320
           D RIH        R R  Y  +R   RS+ R   R +HRR D  Y RSN R     +HRR
Sbjct: 312 DSRIHVDFSQSVARYRQYYNSNRDRKRSSSRSDDREYHRRSDGRYDRSNYR--DDYRHRR 369


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 492 RKLHQQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR 617
           R   Q   K++GL GLYRG  + +    + R+  F  YD+ +
Sbjct: 54  RSCFQNAVKNEGLKGLYRGLTLPLISATLSRSVSFTVYDSLK 95


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 504 QQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 608
           ++++KS G+ G YRG  V + G+  Y A+  G ++
Sbjct: 276 KELYKSVGIRGYYRGVLVGILGMFPYSATDLGTFE 310


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -2

Query: 478 HAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRR 320
           H    P R R RD   RS   +RS     R  HR  DY RS   ++   + RR
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRR 189


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 495 KLHQQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPRP*EH-THCNQ 659
           K  + I+   GL GLY+G   ++  +  Y    F  Y+  R +L R  EH TH  +
Sbjct: 64  KAIKHIYHVYGLHGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLIRDPEHETHARR 119



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 528 LIGLYRGFGVSVQGIIIYRASYFGFYDTA 614
           +   YRGF V++ GI  Y    F  YD A
Sbjct: 184 ICNFYRGFSVTLTGIFPYAGMSFLAYDLA 212



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 259 RYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFART 438
           R FP   + F   ++ ++V +   + +T   R+              S+ F YPL+  R 
Sbjct: 88  RVFPYAGIKFVAYEQVRRVLIRDPEHETHARRFLSGSLAGTC-----SVFFTYPLELIRV 142

Query: 439 RLA 447
           RLA
Sbjct: 143 RLA 145


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 510 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 626
           I+K++G+ G +RG+  ++  II   +  +  Y+T   ML
Sbjct: 276 IYKTEGINGFFRGYSSNMLKIIPVMSITWYTYETVSKML 314


>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 510 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFY-DTARGMLPR 632
           I+K++G+ GLYRG  V   G+  Y+     F  D  RG L +
Sbjct: 253 IYKNNGIKGLYRG-AVPRMGLGAYQTFVMVFLADCVRGYLAK 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,885
Number of Sequences: 5004
Number of extensions: 55394
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)