Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10548
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   4e-11
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   33   0.27 
SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)                   29   3.4  
SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)                       29   3.4  
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)           29   4.4  
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)                   29   4.4  
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)                       29   5.9  
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)                   29   5.9  
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)                    29   5.9  
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)             28   7.7  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   28   7.7  

>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 41/82 (50%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
 Frame = +1

Query: 256 IRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY-FXXXXXXXXXXXXTSLCFVYPLDFA 432
           IRYFPTQALNFAFKD+ K +F     KKT      F             SL FVY LD+ 
Sbjct: 81  IRYFPTQALNFAFKDQVKALF---KPKKTDSNAIKFSKNIASGGAAGAMSLFFVYSLDYC 137

Query: 433 RTRLAAD--VGKGDGQREFSGL 492
           RTRLA D  VGK  G+R+F+G+
Sbjct: 138 RTRLANDAKVGKKGGERQFNGM 159



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 23/43 (53%), Positives = 32/43 (74%)
 Frame = +3

Query: 498 LHQQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 626
           ++++   SDGL+GLYRGF +S  GII+YR  YFG YDT + +L
Sbjct: 162 VYKKTIASDGLVGLYRGFVISCVGIIVYRGFYFGLYDTLKPIL 204



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
 Frame = +1

Query: 649 IVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRA----KSISCT 774
           +VIS+ +   VT  AG+ SYP DT+RRRMMM SG A     SI CT
Sbjct: 211 VVISFVLGYGVTVSAGLASYPIDTIRRRMMMTSGEAVKYKGSIDCT 256



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 209 REQGLLSFWRGNFAN 253
           R +G LSFWRGN AN
Sbjct: 65  RSEGFLSFWRGNLAN 79


>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 516 KSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 626
           K++G+  L++G G ++ G+   RA YF  Y   + ML
Sbjct: 786 KNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKLKDML 822


>SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 454 HRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTAS-SC 332
           +  RD   RS+  +R++ RWL R  R+P    S+ R++S SC
Sbjct: 6   NNNRDN-TRSQVRSRNSNRWLLRQQRQPQRHLSHKRSSSNSC 46


>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 375

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 631 DPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSIS 768
           +P  TPI + +         A  +S+PFDT+R++M + +G+  SIS
Sbjct: 245 EPSATPICM-FVNGCVAGAFAHTLSHPFDTIRKKMQL-TGKEVSIS 288


>SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)
          Length = 272

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 491 RPENSRWPSPLPTSAARRVRAKSRGYTK 408
           RP +SR  S  P+SA+RR  ++SRG  +
Sbjct: 221 RPSSSRPSSARPSSASRRASSRSRGLAR 248


>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
          Length = 773

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 646 PIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSG 750
           P+V           VA   +YP D VRRRM M+ G
Sbjct: 680 PVVAKLFCGAVAGAVAQSGTYPLDVVRRRMQMERG 714


>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 611

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 504 QQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPRP*EH 644
           +++F S+GL G +RG  ++    I   A YFG +     +L    EH
Sbjct: 305 KKVFHSEGLRGCFRGMAITTTRDIPAFALYFGSFQYVCELLTPKGEH 351


>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
          Length = 381

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -2

Query: 457 RHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRRGTPACT 302
           R R RD   RSR   R  +   RR   R   +RS  R  S  +HR  + +CT
Sbjct: 321 RSRSRDRR-RSRSRERRRDDRKRRSRERSPKRRSREREESRSRHRGRSNSCT 371


>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 264

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 510 IFKSDGLI-GLYRGFGVSVQGIIIYRASYFGFYDTARGMLPR 632
           ++K DG+  GLYRG  ++   +    A  FG Y+  +  L R
Sbjct: 222 VYKDDGIRRGLYRGLSINYLRVCPQVAIMFGVYEVTKQFLNR 263


>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 434

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 688 VAGIISYPFDTVRRRMMMQSGRAKSISCT 774
           +A  + +P D VRR+M +  GR+ SI+ T
Sbjct: 139 IAQTVVHPLDVVRRQMQVDRGRSGSITQT 167


>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
          Length = 383

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 510 IFKSDGLIGLYRGFGVSVQGIIIY 581
           I++ +G+ G YRGFG  +   ++Y
Sbjct: 337 IYQQEGIFGFYRGFGALLIQCVVY 360


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 451 RRRDGYVRSRGGTRSTERWLRRHHR-RPDYQRSNARTASSCQHRRGTP 311
           R+ +   R +GG R+T+   ++H R +PD +R+  R       R+GTP
Sbjct: 865 RKVEERARHKGGNRATQEREKKHRRNQPDKRRTQMRIP-----RKGTP 907


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,048,594
Number of Sequences: 59808
Number of extensions: 473799
Number of successful extensions: 1381
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)