Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10548
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   201   7e-54
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   201   7e-54
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.4  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   7.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   7.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  201 bits (490), Expect = 7e-54
 Identities = 102/169 (60%), Positives = 107/169 (63%)
 Frame = +1

Query: 256 IRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFAR 435
           IRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLDFAR
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFAR 140

Query: 436 TRLAADVGKGDGQREFSGLGNXXXXXXXXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXRP 615
           TRLAADVGK  G+REF+GLGN                      +                
Sbjct: 141 TRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTA 200

Query: 616 AACCPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKS 762
               PDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS
Sbjct: 201 RGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKS 249



 Score = 91.1 bits (216), Expect = 1e-20
 Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
 Frame = +3

Query: 507 QIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPRP*EHTHCNQLGHRSDRNH 686
           +IFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLP P +       G       
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224

Query: 687 SR---RYHLLSLRHSP*AHDDAVWSCQEHILYKNTIHCWATI 803
                 Y   ++R             +  ILYK+T+HCWATI
Sbjct: 225 VAGIVSYPFDTVRRRMMMQSG---RAKSEILYKSTLHCWATI 263



 Score = 31.1 bits (67), Expect = 0.013
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 209 REQGLLSFWRGNFAN 253
           +EQG LS+WRGN AN
Sbjct: 65  KEQGFLSYWRGNLAN 79


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  201 bits (490), Expect = 7e-54
 Identities = 102/169 (60%), Positives = 107/169 (63%)
 Frame = +1

Query: 256 IRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFAR 435
           IRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLDFAR
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFAR 140

Query: 436 TRLAADVGKGDGQREFSGLGNXXXXXXXXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXRP 615
           TRLAADVGK  G+REF+GLGN                      +                
Sbjct: 141 TRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTA 200

Query: 616 AACCPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKS 762
               PDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS
Sbjct: 201 RGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKS 249



 Score = 91.1 bits (216), Expect = 1e-20
 Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
 Frame = +3

Query: 507 QIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPRP*EHTHCNQLGHRSDRNH 686
           +IFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLP P +       G       
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224

Query: 687 SR---RYHLLSLRHSP*AHDDAVWSCQEHILYKNTIHCWATI 803
                 Y   ++R             +  ILYK+T+HCWATI
Sbjct: 225 VAGIVSYPFDTVRRRMMMQSG---RAKSEILYKSTLHCWATI 263



 Score = 31.1 bits (67), Expect = 0.013
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 209 REQGLLSFWRGNFAN 253
           +EQG LS+WRGN AN
Sbjct: 65  KEQGFLSYWRGNLAN 79


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 613 PAACCPDPKNTPIVIS 660
           PA+CC  P+N    IS
Sbjct: 160 PASCCNSPENNTCSIS 175


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 287 KLSAWVGKYLMRWRSYHARMKGDP 216
           ++  W     M+W+  +AR  G P
Sbjct: 51  QIKIWFQNRRMKWKKENARATGTP 74


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 344 CVFLSTPPRNTCLYLSLKAKLSAWVGKYLMRWRSYHARMKG 222
           C+F +    N     +  AK   +   Y M W   HA +KG
Sbjct: 236 CIFDNATIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAILKG 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,159
Number of Sequences: 438
Number of extensions: 4272
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)