Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10547
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 5e-19
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.007
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.047
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.25
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.33
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.76
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 30 1.8
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.8
SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.1
SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7) 29 3.1
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 29 3.1
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 29 4.1
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 29 5.4
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 28 7.1
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 7.1
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 28 9.4
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 9.4
SB_17593| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 91.9 bits (218), Expect = 5e-19
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +3
Query: 498 LHQQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQT 677
++++ SDGL+GLYRGF +S GII+YR YFG YDT + +L ++ +VIS+ +
Sbjct: 162 VYKKTIASDGLVGLYRGFVISCVGIIVYRGFYFGLYDTLKPILLG-EDAGVVISFVLGYG 220
Query: 678 VTTVAGIISYPFDTVRRRMMMQSG 749
VT AG+ SYP DT+RRRMMM SG
Sbjct: 221 VTVSAGLASYPIDTIRRRMMMTSG 244
Score = 65.7 bits (153), Expect = 4e-11
Identities = 41/82 (50%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Frame = +1
Query: 256 IRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY-FXXXXXXXXXXXXTSLCFVYPLDFA 432
IRYFPTQALNFAFKD+ K +F KKT F SL FVY LD+
Sbjct: 81 IRYFPTQALNFAFKDQVKALF---KPKKTDSNAIKFSKNIASGGAAGAMSLFFVYSLDYC 137
Query: 433 RTRLAAD--VGKGDGQREFSGL 492
RTRLA D VGK G+R+F+G+
Sbjct: 138 RTRLANDAKVGKKGGERQFNGM 159
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 209 REQGLLSFWRGNFAN 253
R +G LSFWRGN AN
Sbjct: 65 RSEGFLSFWRGNLAN 79
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 510 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFY---DTARGMLPDPKNTPIVISWAIAQTV 680
I + +G++ LY+G S G+ + F Y D +P TPI + +
Sbjct: 202 ILREEGILALYKGVTPSFLGLFPFAGGSFLAYQILDKVDSTRTEPSATPICM-FVNGCVA 260
Query: 681 TTVAGIISYPFDTVRRRMMM 740
A +S+PFDT+R++M +
Sbjct: 261 GAFAHTLSHPFDTIRKKMQL 280
Score = 36.7 bits (81), Expect = 0.020
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 510 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWA-IAQTVTT 686
++K +G+ ++G GVS + Y A + ++ L DP N + S + +A T +T
Sbjct: 104 VYKREGIKAFWKGNGVSCIRLFPYSAVQYAAFNRIVASLEDPHNGELSDSGSMLAGTSST 163
Query: 687 VAGIIS-YPFDTVRRRMMMQ 743
+ +++ YP + ++ R+ +Q
Sbjct: 164 LIAMVTVYPCEVIKTRLTVQ 183
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 35.9 bits (79), Expect = 0.035
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +3
Query: 510 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGM-LPDPKNTP----IVISWAIAQ 674
I++ +G+ YRG S+ GII Y Y+T + L KN +++ A
Sbjct: 276 IYQKEGIRSFYRGLFPSLLGIIPYAGIDLAVYETLKNFYLNYHKNQSADPGVLVLLACGT 335
Query: 675 TVTTVAGIISYPFDTVRRRMMMQS 746
+T + SYP VR R+ Q+
Sbjct: 336 ASSTCGQLASYPLSLVRTRLQAQA 359
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 35.5 bits (78), Expect = 0.047
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +3
Query: 510 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML--PDPKNTPIVISWAIAQTVT 683
+FK++G+ +Y+G + + + + G YD + M D +N I+ A + T
Sbjct: 76 LFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVKAMYGDTDVQNPKILKKIAASITTG 135
Query: 684 TVAGIISYPFDTVRRRMMMQSGR 752
+A ++ P + V+ R +GR
Sbjct: 136 IMAVSVAQPTEVVKIRFQADAGR 158
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 516 KSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 626
K++G+ L++G G ++ G+ RA YF Y + ML
Sbjct: 786 KNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKLKDML 822
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 32.7 bits (71), Expect = 0.33
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +3
Query: 504 QQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVT 683
+QI K + ++GLY+G + G+ + A FG L IS AIA V
Sbjct: 199 KQIIKRESVLGLYKGMASPLAGLGLINAIIFGVQGETLRRLNGSGTMAQAISGAIAGGVQ 258
Query: 684 TVAGIISYPFDTVRRRMMMQ 743
+ I+ P + + R+ +Q
Sbjct: 259 S---IVCCPMELAKTRVQVQ 275
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = +3
Query: 504 QQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKN------TPIVISWA 665
+++F S+GL G +RG ++ I A YFG + +L PK +PI + ++
Sbjct: 305 KKVFHSEGLRGCFRGMAITTTRDIPAFALYFGSFQYVCELL-TPKGEHVDNLSPIRLFFS 363
Query: 666 IAQTVTTVAGIISYPFDTVR 725
T++ I++YP D V+
Sbjct: 364 -GGIAGTLSWILTYPVDMVK 382
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 31.5 bits (68), Expect = 0.76
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Frame = +3
Query: 504 QQIFKSDG-LIGLYRGFG------VSVQGIIIYR-ASYFGFYDTARGMLP--DPKNTPIV 653
+QIF ++G ++ LYRGF + GI Y S+ F+ +G+L P+ V
Sbjct: 44 KQIFMTEGGMVALYRGFTPTSLSMIPAVGIGFYAFESFKDFFVAMKGVLTRIHPETGETV 103
Query: 654 ISWAIAQTVTTVAGIIS----YPFDTVRRRMMM 740
++ +AG S YP D VRRRM +
Sbjct: 104 LTAPGGLLCGALAGATSQTLAYPLDVVRRRMQL 136
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +3
Query: 510 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTV 689
I ++ G+ G Y+G ++ I +FGFY+ + +L T +S T +
Sbjct: 254 IAQTYGIRGCYQGLSATLVRNIPANGFFFGFYEFTKNLLTPEGGTVNDVSPLGLLTSGAM 313
Query: 690 AG----IISYPFDTVRRRMM 737
G ++YP D V+ MM
Sbjct: 314 GGFFYWFLTYPTDLVKSSMM 333
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 504 QQIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVT 683
++I +G+ GLY+G S+ I + YD + D ++ + +
Sbjct: 77 RRIHIEEGIRGLYKGLVPSLVSIAPFLGVQQSVYDIMKLRALDSAFAANSGTFLVCGAIA 136
Query: 684 -TVAGIISYPFDTVRRRMMMQSGR 752
+A + +P D VRR+M + GR
Sbjct: 137 GMIAQTVVHPLDVVRRQMQVDRGR 160
>SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 454 HRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTAS-SC 332
+ RD RS+ +R++ RWL R R+P S+ R++S SC
Sbjct: 6 NNNRDN-TRSQVRSRNSNRWLLRQQRQPQRHLSHKRSSSNSC 46
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +3
Query: 510 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLP-----DPKNTPI--VISWAI 668
+FK +G+ YR + + I ++ +F Y+ AR L DPK I + A+
Sbjct: 42 VFKEEGIRAFYRSYTTQLSMNIPFQTLHFTVYEYARKALNPLGGYDPKTHVIAGATAGAV 101
Query: 669 AQTVTTVAGIISYPFDTVRRRMM 737
A +TT + +T R ++
Sbjct: 102 ASAITTPLDVAKTLLNTQERSVV 124
>SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 272
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 491 RPENSRWPSPLPTSAARRVRAKSRGYTK 408
RP +SR S P+SA+RR ++SRG +
Sbjct: 221 RPSSSRPSSARPSSASRRASSRSRGLAR 248
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = +3
Query: 561 VQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT-----VAGIISYPFDTVR 725
+Q +++ + + G Y R DP T + + V V +I YPF+TV
Sbjct: 240 IQHLVLIKMGHTGLYGDTRDCNEDPPPTSDMTQSYYPELVANFMAFVVPDLILYPFETVL 299
Query: 726 RRMMMQSGR 752
R+ +Q R
Sbjct: 300 HRLYIQGTR 308
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 510 IFKSDGLIGLYRGFGVSVQGIIIY 581
I++ +G+ G YRGFG + ++Y
Sbjct: 337 IYQQEGIFGFYRGFGALLIQCVVY 360
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 645 PIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSG 749
P+V VA +YP D VRRRM M+ G
Sbjct: 680 PVVAKLFCGAVAGAVAQSGTYPLDVVRRRMQMERG 714
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -1
Query: 457 RHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRRGTPACT 302
R R RD RSR R + RR R +RS R S +HR + +CT
Sbjct: 321 RSRSRDRR-RSRSRERRRDDRKRRSRERSPKRRSREREESRSRHRGRSNSCT 371
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +3
Query: 489 SRKLHQQIFKSDGLIGLYRGFGVSVQ----GIIIYRASYFGFYDTARGMLPDPKNTPIVI 656
+R L ++ F G G Y+G+ S+ I+ ASY GFY G L +++
Sbjct: 148 ARILIRETFHQHGPGGFYKGYFASLMTYAPSSAIWWASY-GFYTGVIGNLSADGTHRLLV 206
Query: 657 SWAIAQTVTTVAGIISYPFDTVRRRM 734
+ A ++ P D +R R+
Sbjct: 207 LGSSGVLAGVTAATLTNPLDVIRTRL 232
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 451 RRRDGYVRSRGGTRSTERWLRRHHR-RPDYQRSNARTASSCQHRRGTP 311
R+ + R +GG R+T+ ++H R +PD +R+ R R+GTP
Sbjct: 865 RKVEERARHKGGNRATQEREKKHRRNQPDKRRTQMRIP-----RKGTP 907
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 231 SGVVTSPTHQVLPDPGA-QLRLQGQVQAG 314
S + TSP H + P PGA Q LQ + G
Sbjct: 1142 SSITTSPIHHLAPPPGAIQSALQAHLTGG 1170
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/59 (38%), Positives = 27/59 (45%)
Frame = -1
Query: 496 FRDRRIHAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQHRR 320
+RD+R H P HRR RSR +RS R RR R P R R+ S H R
Sbjct: 206 YRDQR-RRSHSPAHHRRS----RSRSRSRSPRR--RRRSRSP---RRRRRSRSPSPHHR 254
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 364 QRSNARTASSCQHRRGTPACTCP*RRS*APGSGST*C 254
Q + R S CQ RRG C CP + S P + S C
Sbjct: 934 QLVSCRFYSKCQRRRGGAQCVCP-QTSECPVASSFVC 969
>SB_17593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 542 VQTDQTVGLEDLLMQFPRPENSRWPSPLPTSAA 444
V ++ VG DL ++FP+ SR PSP+P +++
Sbjct: 120 VNLEECVG-NDLDVKFPQSRYSRTPSPIPGNSS 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,416,038
Number of Sequences: 59808
Number of extensions: 420311
Number of successful extensions: 1267
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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