Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10547
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   158   6e-41
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   158   6e-41
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   7.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   7.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  158 bits (383), Expect = 6e-41
 Identities = 71/82 (86%), Positives = 77/82 (93%)
 Frame = +3

Query: 507 QIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT 686
           +IFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTT
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224

Query: 687 VAGIISYPFDTVRRRMMMQSGR 752
           VAGI+SYPFDTVRRRMMMQSGR
Sbjct: 225 VAGIVSYPFDTVRRRMMMQSGR 246



 Score =  134 bits (323), Expect = 1e-33
 Identities = 63/81 (77%), Positives = 65/81 (80%)
 Frame = +1

Query: 256 IRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFAR 435
           IRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLDFAR
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFAR 140

Query: 436 TRLAADVGKGDGQREFSGLGN 498
           TRLAADVGK  G+REF+GLGN
Sbjct: 141 TRLAADVGKAGGEREFTGLGN 161



 Score = 31.1 bits (67), Expect = 0.012
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 209 REQGLLSFWRGNFAN 253
           +EQG LS+WRGN AN
Sbjct: 65  KEQGFLSYWRGNLAN 79


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  158 bits (383), Expect = 6e-41
 Identities = 71/82 (86%), Positives = 77/82 (93%)
 Frame = +3

Query: 507 QIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT 686
           +IFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTT
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224

Query: 687 VAGIISYPFDTVRRRMMMQSGR 752
           VAGI+SYPFDTVRRRMMMQSGR
Sbjct: 225 VAGIVSYPFDTVRRRMMMQSGR 246



 Score =  134 bits (323), Expect = 1e-33
 Identities = 63/81 (77%), Positives = 65/81 (80%)
 Frame = +1

Query: 256 IRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFAR 435
           IRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLDFAR
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFAR 140

Query: 436 TRLAADVGKGDGQREFSGLGN 498
           TRLAADVGK  G+REF+GLGN
Sbjct: 141 TRLAADVGKAGGEREFTGLGN 161



 Score = 31.1 bits (67), Expect = 0.012
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 209 REQGLLSFWRGNFAN 253
           +EQG LS+WRGN AN
Sbjct: 65  KEQGFLSYWRGNLAN 79


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 287 KLSAWVGKYLMRWRSYHARMKGDP 216
           ++  W     M+W+  +AR  G P
Sbjct: 51  QIKIWFQNRRMKWKKENARATGTP 74


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 344 CVFLSTPPRNTCLYLSLKAKLSAWVGKYLMRWRSYHARMKG 222
           C+F +    N     +  AK   +   Y M W   HA +KG
Sbjct: 236 CIFDNATIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAILKG 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,248
Number of Sequences: 438
Number of extensions: 3819
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)