Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10546X
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    30   0.11 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.4  

>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +2

Query: 116 HCHGLHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPVYAA 271
           +C G     L + S+ G  L C +L R   +R  LRS   HRP+I   +Y A
Sbjct: 74  NCGGACAMELDKESIKGVVLTCSALKRS--YRDILRSSLEHRPAILRFIYLA 123


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 170 SLHCPSLHRPSLHRPNLRSPSIHRPSIYSPVY 265
           S+  PS+      +P L   S+ RPS+ SP +
Sbjct: 380 SIPVPSIQEAESQKPVLTGSSMRRPSVTSPTF 411


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 137  PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSP 259
            P    P +  PS   P +  P+   P + +PS   PS+ +P
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252



 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 152  PSLHGPSLHCPSLHRPSLHRPNLRSPS----IHRPSIYSP 259
            P +  PS+  P + +PS+  P + +PS    + +PS+ +P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAP 1131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,840
Number of Sequences: 5004
Number of extensions: 10199
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)