Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10546X
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0808 - 31883413-31883813,31883903-31884377 29 0.95
05_02_0049 - 6083364-6084111,6084140-6084246 29 1.3
01_06_0252 + 27889652-27892450 29 1.3
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979... 29 1.7
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513... 27 5.1
07_01_1163 - 11011362-11011760,11011803-11011847,11011880-110120... 27 6.7
04_04_1344 + 32787574-32787632,32788488-32789070,32789211-327894... 27 6.7
07_01_0307 - 2194796-2199274 26 8.9
06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568... 26 8.9
06_01_0486 - 3455030-3455770 26 8.9
02_03_0095 + 15144538-15145596 26 8.9
>02_05_0808 - 31883413-31883813,31883903-31884377
Length = 291
Score = 29.5 bits (63), Expect = 0.95
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +2
Query: 113 VHCHGLHRPSLHRPSLHGPSLHCPSLHRP 199
V H LH LHRP PS H P HRP
Sbjct: 33 VRPHQLHDALLHRPRRRRPSRHFPP-HRP 60
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 149 RPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRP 244
R L G + LH LHRP R PS H P
Sbjct: 25 RARLPGAGVRPHQLHDALLHRPRRRRPSRHFP 56
>05_02_0049 - 6083364-6084111,6084140-6084246
Length = 284
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 358 STKNSRGHCWSSVRWRSISCSVSWFSVCTSS 266
S S G CWSS WRS S + S C+++
Sbjct: 52 SAAASAGRCWSSSSWRSSPPSPAARSTCSTA 82
>01_06_0252 + 27889652-27892450
Length = 932
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 122 HGLHRPSLHRPSLHGPSLHC 181
H + PSLH P LH LHC
Sbjct: 280 HAVSFPSLHEPRLHVNQLHC 299
>08_02_1547 + 27795664-27795674,27795743-27795892,27796182-27797906,
27799447-27799546,27799657-27800268,27800399-27800521,
27800905-27801039,27801108-27801209,27801716-27801778,
27801854-27802045,27802121-27802258,27802632-27802694,
27803068-27803466
Length = 1270
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +2
Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSI 250
P RPSL P P RPSL P SP HRP +
Sbjct: 1184 PRERRPSLLLPLPWSPRKRRPSLLLPPPWSPWKHRPGV 1221
>06_03_0613 +
22748223-22749513,22750046-22750179,22751066-22751309,
22751401-22751609,22751691-22751740,22751933-22752053,
22752138-22752383
Length = 764
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 383 SRLEHCMLEHQEQPWSLLEQCTLAQYILQRKLVQRMYEQRK 261
S + HC++E QE P C L++ + L + E RK
Sbjct: 520 SIIGHCIVEDQENPNIASSLCLLSECVTNGSLRSHLTEWRK 560
>07_01_1163 -
11011362-11011760,11011803-11011847,11011880-11012014,
11012101-11012994
Length = 490
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 146 HRPSLHGPSLHCPSLHRPSLHRPNLRSPSIH 238
H P+ P+LH P L R +L+R + ++H
Sbjct: 165 HFPNGMAPALHFPRLARLTLYRVTISEDTLH 195
>04_04_1344 +
32787574-32787632,32788488-32789070,32789211-32789423,
32789884-32790173,32791201-32791312,32791394-32791630,
32791714-32792394
Length = 724
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 191 HRPSLHRPNLRSPSIHRPSIYSPVYAAR 274
HR N +S S H PS+ + +YA+R
Sbjct: 660 HRKEEEAANRQSSSSHHPSLAATIYASR 687
>07_01_0307 - 2194796-2199274
Length = 1492
Score = 26.2 bits (55), Expect = 8.9
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 119 CHGLHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSI 250
C+ +H LH +L SL C SLH ++ +R PSI SI
Sbjct: 576 CYIIH-DLLHNLALKVASLECVSLHSSNVKSVEIR-PSIRHLSI 617
>06_03_0272 +
19053455-19053587,19054665-19056627,19056827-19056887,
19056975-19057198,19057573-19057642,19058453-19058515
Length = 837
Score = 26.2 bits (55), Expect = 8.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +2
Query: 113 VHCHGLHR-PSLHRPSLHGPSLHCPSLHRPSLHR-----PNLRSPSIHRPSIY 253
+H +G H PSL+ S + P +H P R +LH P+ R+ S H + Y
Sbjct: 263 LHWNGSHHSPSLNVQSPNIPQVHAPLPTRQNLHGYAEPIPHARASSYHAGAGY 315
>06_01_0486 - 3455030-3455770
Length = 246
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +2
Query: 137 PSLHRPSLHGPSLHCPSLH---RPSLHRPNLRSPSIHRPSIYSPVY 265
P H PS CPS H P RP P + P Y P Y
Sbjct: 58 PEHHHHHKPPPSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPPY 103
>02_03_0095 + 15144538-15145596
Length = 352
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 209 RPNLRSPSIHRPSIYSPVYA 268
R NL P+I RPS+Y PV A
Sbjct: 209 RWNLMVPAILRPSVYRPVRA 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,511,336
Number of Sequences: 37544
Number of extensions: 76378
Number of successful extensions: 311
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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