Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10546X
         (383 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032654-11|CAB63389.2|  529|Caenorhabditis elegans Hypothetical...    31   0.21 
Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z70270-10|CAA94231.1|  726|Caenorhabditis elegans Hypothetical p...    31   0.37 
Z68215-17|CAA92458.1|  726|Caenorhabditis elegans Hypothetical p...    31   0.37 
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    30   0.49 
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   0.85 
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U40959-4|AAA81768.1|  112|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pomb...    27   6.0  
AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pomb...    27   6.0  

>AL032654-11|CAB63389.2|  529|Caenorhabditis elegans Hypothetical
           protein Y52B11A.7 protein.
          Length = 529

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 152 PSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPV 262
           P+++G  +  P L  P +  P L SP I  P+I+SP+
Sbjct: 385 PAIYGSVILSPWLFVPVILSPRLMSPIIVSPAIFSPI 421



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPV 262
           P+++   +  P L  P +  P L  P + SP+I  P + SP+
Sbjct: 385 PAIYGSVILSPWLFVPVILSPRLMSPIIVSPAIFSPIVLSPL 426


>Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical
           protein F19H8.5 protein.
          Length = 514

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPVYAA 271
           P++  P +  PS+  P +  P++  P + SP +  P I+SP+  A
Sbjct: 381 PNIFSPLILNPSVLSPWIFSPAVPLPFILSPYLLSPYIFSPLVMA 425



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPVY 265
           P L  P +  P +  P +  P +  PN+ +P +  P + SP++
Sbjct: 411 PYLLSPYIFSPLVMAPFILNPYVLSPNIFNPYVLSPLVLSPLF 453



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPV 262
           P +  P L  P +  P +  P +  P + SP+I  P + SP+
Sbjct: 406 PFILSPYLLSPYIFSPLVMAPFILNPYVLSPNIFNPYVLSPL 447



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 152 PSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSP 259
           P +  P++  P +  PS+  P + SP++  P I SP
Sbjct: 376 PVIFSPNIFSPLILNPSVLSPWIFSPAVPLPFILSP 411



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSP 259
           P +  P ++G S+  P +  P++  P + +PS+  P I+SP
Sbjct: 362 PYMFSP-VYGLSVLGPVIFSPNIFSPLILNPSVLSPWIFSP 401


>Z70270-10|CAA94231.1|  726|Caenorhabditis elegans Hypothetical
           protein C53B4.8a protein.
          Length = 726

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 128 LHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSP 259
           +++ S+  P +  P L CPS+  P L    + SP +  P I+SP
Sbjct: 599 INKLSVLGPLVISPQLFCPSVLSPLLMSLPVISPQVGNPLIFSP 642



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 152 PSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPV 262
           P++  P    P++++ S+  P + SP +  PS+ SP+
Sbjct: 587 PTVFSPQAFAPTINKLSVLGPLVISPQLFCPSVLSPL 623



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYS 256
           P +  P +  P + CP +  P++    + SPS+  PSI++
Sbjct: 672 PYVMSPLILSPFVLCPDVLSPTVLSGVVLSPSVLSPSIFT 711


>Z68215-17|CAA92458.1|  726|Caenorhabditis elegans Hypothetical
           protein C53B4.8a protein.
          Length = 726

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 128 LHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSP 259
           +++ S+  P +  P L CPS+  P L    + SP +  P I+SP
Sbjct: 599 INKLSVLGPLVISPQLFCPSVLSPLLMSLPVISPQVGNPLIFSP 642



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 152 PSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPV 262
           P++  P    P++++ S+  P + SP +  PS+ SP+
Sbjct: 587 PTVFSPQAFAPTINKLSVLGPLVISPQLFCPSVLSPL 623



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYS 256
           P +  P +  P + CP +  P++    + SPS+  PSI++
Sbjct: 672 PYVMSPLILSPFVLCPDVLSPTVLSGVVLSPSVLSPSIFT 711


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPVYAA 271
           P L  P +  PS+  P +  P++  P + SP +  P ++SP+  A
Sbjct: 635 PGLFTPLILNPSVLSPYVFSPTVGIPFILSPYLLSPYVFSPLVMA 679



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 152 PSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSP 259
           P++  P L  P +  PS+  P + SP++  P I SP
Sbjct: 630 PTVLSPGLFTPLILNPSVLSPYVFSPTVGIPFILSP 665



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSP 259
           P L  P ++G ++  P++  P L  P + +PS+  P ++SP
Sbjct: 616 PILFTP-IYGLNVLGPTVLSPGLFTPLILNPSVLSPYVFSP 655



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPV 262
           P +  P L  P +  P +  P +  P + SP++  P + SP+
Sbjct: 660 PFILSPYLLSPYVFSPLVMAPFILNPYVLSPNVFNPYVLSPL 701



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 137 PSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPV 262
           P L  P +  P +  P +  P +  PN+ +P +  P I SP+
Sbjct: 665 PYLLSPYVFSPLVMAPFILNPYVLSPNVFNPYVLSPLILSPL 706


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 134  RPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSP 259
            +PS   PS +GPS + PS + PS + P+   P+ + PS   P
Sbjct: 1001 KPSPSGPSPNGPSPNGPSPNGPSPNGPSPNGPTPNWPSPNGP 1042


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 152 PSLHGPSLHCPSLHRPSLHRPNLRSPSIHRPSIYSPVYAA 271
           P+   P+   PS   PS   P+  SPS   PS  SP Y A
Sbjct: 355 PAPQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPSPSYPA 394


>U40959-4|AAA81768.1|  112|Caenorhabditis elegans Hypothetical
           protein B0310.4 protein.
          Length = 112

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 131 HRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSPSIHR 241
           HR   HR   H    H    HR   HR   R    HR
Sbjct: 51  HRGETHRGETHRGKTHRGETHRGETHRGETRRGETHR 87


>AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform b protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 176 HCPSLHRPSLHRPNLRSPSIH 238
           HCPSL +  L  P L+  SIH
Sbjct: 447 HCPSLPQVKLPEPPLQKSSIH 467


>AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform a protein.
          Length = 741

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 176 HCPSLHRPSLHRPNLRSPSIH 238
           HCPSL +  L  P L+  SIH
Sbjct: 447 HCPSLPQVKLPEPPLQKSSIH 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,586,389
Number of Sequences: 27780
Number of extensions: 56318
Number of successful extensions: 272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)