Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10544
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 28 1.6
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 27 2.2
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 27 2.9
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 27 3.8
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 27 3.8
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 5.0
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 5.0
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 26 6.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.8
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 274 IVKFFFTKLIFARTFREQCTSYFL 203
IV F T L+ ARTF E T+Y L
Sbjct: 1342 IVNVFITPLVKARTFPESLTTYHL 1365
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 203 ASSHSILKDSSSFSPIHCGFGSEAGTLLQVVFEGRLAESPLSFSELSV 60
A ++LK+ SSF P + G E + Q F G++++ +S S+ +
Sbjct: 336 AKELAVLKEKSSFFPTNTGNTFETKPVKQDFFYGKVSDKGVSSSKKKI 383
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = -3
Query: 586 DIYVFTRLSSGVFLRARCRQFHTVMESDFEVG*KPIATSFHVSN*TIDWI 437
D+ +++LS ++LR+ + M +D +G ++ SF V+ T +W+
Sbjct: 153 DVSRYSKLSLNIYLRSSSSRSRNGMGNDAFLGGIKLSPSFIVNKLTDEWV 202
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 325 FFKEWSANVLHQKDCFCIVKF 263
F +W+ N +KDC C+ KF
Sbjct: 232 FRDDWTMNTSPEKDCRCVRKF 252
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 433 SGLEALISKPRILIT*LAELANRCSHMIWVERNPYMFF 320
S LE S+P IL+T L S IW +P +FF
Sbjct: 39 SALEERASRPSILVTFLVLAGTILSLYIWPILSPDLFF 76
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 591 IVISTYSHGSVVEFFSVHDVGSST 520
+V+ G+VVEF +HD G ++
Sbjct: 903 VVLHPEHEGAVVEFLDIHDAGKAS 926
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 61 TDNSENERGDSASRPSKTTCSNVPASDPKPQWMGENEL 174
T + E +RG S+S+PS+ + P+P+ ++L
Sbjct: 262 TSDLEQQRGTSSSQPSENDANITALPKPEPKMYENSDL 299
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 19 RGHPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDP 144
R HP P KP NS ++ S++RPS + PA+ P
Sbjct: 291 RKHPSP-----YKPYLNSSHDTLGSSTRPSSADTAGSPATSP 327
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 581 DITMKTDMVGRLPITDIYFKVNLMEKDLKISVENIKLC 694
D T+K + RL + Y ++NL+EK ++ E I LC
Sbjct: 433 DPTLKRENRSRLVLQIFYHELNLLEKSMQ---ETIYLC 467
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 250 LIFARTFREQCTSYFLLHHILF 185
LIF RTF ++ ++HH L+
Sbjct: 2398 LIFVRTFSQETFLIIIMHHALY 2419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,046
Number of Sequences: 5004
Number of extensions: 73233
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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