Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10544
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0389 - 8456957-8459917,8461941-8462267                           31   0.74 
07_03_0382 + 17470508-17470807,17471449-17474517                       28   9.2  
05_03_0487 + 14629678-14629789,14637563-14637687,14637898-146379...    28   9.2  
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727...    28   9.2  

>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 315 SLKNMYGLRSTQIMWLHRLANSASQVIRIRGLDIKASSPEIIQSIVQLLTWNDVAIGF 488
           SL N+  L      WL  L    S ++ +R LD++ ++P I+ S +  L       GF
Sbjct: 596 SLSNLQFLILRCCYWLETLPEEISNLVSLRSLDLEGTTPHIVLSRLSALEQLTALHGF 653


>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 318 LKNMYGLRSTQIMWLHRLANSASQVIRIRGLDIKASS-PEIIQSIVQL 458
           L+N+  L      WLH L      + R++ LD++ +S  +++ S+V L
Sbjct: 610 LRNLQFLGLRYCNWLHTLPKGIGNLHRLQTLDLRGTSLHQVLPSLVNL 657


>05_03_0487 +
           14629678-14629789,14637563-14637687,14637898-14637987,
           14638267-14638319,14638616-14638718,14639057-14639131,
           14639479-14639583
          Length = 220

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 207 KYDVHCSRNVLAKINFVKKNFTMQKQSFWW 296
           KY+  C +N L K N V K  T      WW
Sbjct: 22  KYEELCGKNSLLKRNLVPKKTTSMGFERWW 51


>05_03_0001 -
           7269231-7269436,7269536-7270100,7270600-7270821,
           7270913-7271155,7271227-7271481,7272017-7272370,
           7273082-7273164,7273250-7273630,7273874-7274027
          Length = 820

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +1

Query: 37  PGICECKPTDNSENERGDSASRP-SKTTCSNVPASDPKPQWMGENELESFKIECDEAENM 213
           PG      +  ++ E G++  R  ++       A   KP+   E E E F +E  E++  
Sbjct: 41  PGALALLESPTADREEGEAPRRSGAEQGARRAAAGSEKPEGSEEAEDEEFLVEEYESDGE 100

Query: 214 TCIAHE 231
            C+  E
Sbjct: 101 VCVRRE 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,020,926
Number of Sequences: 37544
Number of extensions: 445695
Number of successful extensions: 1214
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)