Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10544
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 33 0.19
SB_43391| Best HMM Match : WGR (HMM E-Value=9.7) 33 0.25
SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.40
SB_4988| Best HMM Match : Upf2 (HMM E-Value=3.3) 32 0.57
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 31 1.3
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019) 31 1.3
SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12) 30 2.3
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_38803| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 29 4.1
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 29 4.1
SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16) 29 4.1
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_56276| Best HMM Match : Sod_Fe_C (HMM E-Value=6.6) 29 5.4
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_28679| Best HMM Match : RVT_1 (HMM E-Value=9.3e-08) 29 5.4
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_59312| Best HMM Match : Tropomodulin (HMM E-Value=0.11) 28 7.1
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 28 7.1
SB_3061| Best HMM Match : Tropomodulin (HMM E-Value=0.032) 28 7.1
SB_13896| Best HMM Match : bZIP_1 (HMM E-Value=3.6) 28 7.1
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_30076| Best HMM Match : Collagen (HMM E-Value=8.9e-07) 28 9.4
SB_26729| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 28 9.4
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 1 KGEKGDRGHPGPPGICECKPTDNSENERGDS 93
+GE G RG PG PG + D S ERG++
Sbjct: 231 RGETGPRGRPGEPGADGVRGPDGSTGERGET 261
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 1 KGEKGDRGHPGPPGICECKPTDNSENERGDS 93
+GE G RG PG PG + D S ERG++
Sbjct: 231 RGETGPRGRPGEPGADGVRGPDGSTGERGET 261
>SB_43391| Best HMM Match : WGR (HMM E-Value=9.7)
Length = 247
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 88 DSASRPSKTTCSNVPASDPKPQWMGENELESFKIECDEAENMTCIAHETFSQKSIL 255
D SRPS+ +C+++ A+DP Q E+ +++ E+E M+ + FS +L
Sbjct: 131 DEQSRPSRASCAHLHATDPAAQTAMESSFHE-RLDSIESEGMSPLDLRRFSGLDLL 185
>SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 88 DSASRPSKTTCSNVPASDPKPQWMGENELESFKIECDEAENMTCIAHETFSQKSIL 255
D SRPS+ +C+++ A+DP Q E+ +++ E+E M+ + FS +L
Sbjct: 397 DEQSRPSRASCAHLHATDPAAQTAMESSFHE-RLDSIESEGMSPLDLRRFSGLDLL 451
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.7 bits (61), Expect(2) = 0.40
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1 KGEKGDRGHPGP 36
KGEKGDRG PGP
Sbjct: 3268 KGEKGDRGLPGP 3279
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 1 KGEKGDRGHPGPPGICECKPTDNSENERG 87
KG KGD G PG PG + E ++G
Sbjct: 3742 KGGKGDPGFPGLPGQAGLRGLQGPEGQKG 3770
Score = 22.2 bits (45), Expect(2) = 0.40
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1
Query: 10 KGDRGHPGPPGI 45
KG++G GPPG+
Sbjct: 3315 KGEQGPQGPPGL 3326
>SB_4988| Best HMM Match : Upf2 (HMM E-Value=3.3)
Length = 203
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 216 VHCSRNVLAKINFVKKNFTMQKQSF-WWSTFADHSLK 323
+HCS V+A N VK+N T++ WW+ F +K
Sbjct: 151 LHCSEGVVALANAVKQNTTLRVLKLDWWNNFDSDIVK 187
>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 660
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 1 KGEKGDRGHPGPPGICECKPTDNSENERGDSA-SRPSKTTCSNVPASDPKPQWMGENELE 177
+GEKGDRG PG G + +D ++ + + +T N P +P + NE
Sbjct: 139 RGEKGDRGIPGVGGSVIAQKSDTGDDGKEPIVYPKEERTGSINAPGIRVEPSSLTVNENA 198
Query: 178 SFKIEC 195
+ C
Sbjct: 199 AATFTC 204
>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
Length = 448
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 178 IQVHSHPSTAALDLRPAHCYRLFSKVDLPNLLFHSLN 68
++VH HPS+ DL H Y K D + FH N
Sbjct: 268 VEVHFHPSSPKYDLVEVHFYPSNHKCDSVEVTFHPSN 304
>SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)
Length = 567
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 4 GEKGDRGHPGPPGICECKPTDNSENERGDSASRPSKTTCS 123
G+KGDRG GP G K + E G ++P TT S
Sbjct: 248 GQKGDRGERGPQGPPGPKGPIGPKGEPGPPLTKPKITTGS 287
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Frame = +3
Query: 216 VHCSRNVLAKINFVKKNFTMQKQSFWWSTFADHSLKNMYGLRSTQ------IMWLH---- 365
+HCS V+A N +K+N+ ++ +F S+K + + S + LH
Sbjct: 851 LHCSEGVVALANALKQNYELRVLKLEGDSFESDSVKAIAEMLSENWKLQDLSLRLHCSEG 910
Query: 366 --RLANSASQVIRIRGLDIKASSPE--IIQSIVQLLTWN 470
LAN+ Q +R LD++ S E +++I ++L+ N
Sbjct: 911 VVALANALKQNYNLRVLDLEGDSFERDSVKAIAEMLSGN 949
>SB_38803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 366 RLANSASQVIRIRGLDIKASSPEIIQ-SIVQLLTWNDVAIGFYPTSKSLSITVWNCLHRA 542
R A+ S+ I + L+ + + ++ S QLLT +++ YP+ K LS+ +W+ H +
Sbjct: 2 RKAHGGSEDINLALLEYRNTPVTGLKYSPAQLLTSQMLSLVGYPSLKLLSMFMWSWRHGS 61
Query: 543 RRKTPLLS 566
R++ +++
Sbjct: 62 RKRRHIMT 69
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = +1
Query: 4 GEKGDRGHPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQWMGE 165
G+KGD+G PG PG + RGD R P D P GE
Sbjct: 388 GQKGDQGMPGKPGNPGAAGLRGAPGARGDYGERGE----PGAPGRDGAPGAQGE 437
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 4 GEKGDRGHPGPPGICECKPTDNSENERGDSASR 102
G KGDRG PG G K E RG R
Sbjct: 556 GPKGDRGSPGVSGASGAKGAKGHEGGRGKRGQR 588
>SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)
Length = 748
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 152 CGFGSEAGTLLQVVFEGRLAESPLSFSEL-SVGLHSQIPGGPGCPLSP 12
C GS+ + +++V+E P SFS+ S G+H+ G G P
Sbjct: 102 CSVGSQTRSRIKIVYESWGGTCPYSFSDTRSCGIHNNGCMGSGASCDP 149
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 1 KGEKGDRGHPGPPGI 45
+G+ G GHPGPPG+
Sbjct: 261 RGDMGPPGHPGPPGV 275
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 4 GEKGDRGHPGPPG 42
G+KGDRG GPPG
Sbjct: 256 GQKGDRGDMGPPG 268
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +1
Query: 1 KGEKGDRGHPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQ 153
KG+KGD+G G PGI + E G + K P P P+
Sbjct: 82 KGDKGDKGDTGAPGIDGQPGPQGEKGETGPQGEQGPKGDTG--PQGQPGPE 130
>SB_56276| Best HMM Match : Sod_Fe_C (HMM E-Value=6.6)
Length = 196
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 28 PGPPGICECKPTDNSENERGDSAS 99
P PPGI KPT N GDS +
Sbjct: 41 PRPPGIESSKPTQNLRTHAGDSGN 64
>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 91 SASRPS--KTTCSNV-PASDPKPQWMGENELESFKIECDEAEN 210
S+S PS +T N+ P S P P W N LES ++ DE ++
Sbjct: 510 SSSAPSDRSSTSGNILPPSTP-PMWRKHNSLESLRLPGDEIDS 551
>SB_28679| Best HMM Match : RVT_1 (HMM E-Value=9.3e-08)
Length = 948
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 215 RALLTKRSRKNQFCKEKFYDAKTIFLVEYVCRPFLEEHV 331
R L + +R+ + C+ K+YDAK L E + EH+
Sbjct: 300 RKLRNRVNRERKSCRSKYYDAKVEHLKESKPSTWWREHI 338
>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 1 KGEKGDRGHPGPPG 42
KGE GD+G PG PG
Sbjct: 248 KGESGDKGQPGKPG 261
>SB_59312| Best HMM Match : Tropomodulin (HMM E-Value=0.11)
Length = 561
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 216 VHCSRNVLAKINFVKKNFTMQKQSFWWSTFADHSLK 323
+HCS V+A N +KKN+ ++ +F S+K
Sbjct: 179 LHCSEGVVALANALKKNYKLRVLELEGDSFESDSVK 214
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 1 KGEKGDRGHPGPPG 42
+G+KGDRG PGP G
Sbjct: 1420 RGDKGDRGLPGPSG 1433
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 1 KGEKGDRGHPGPPGICECKPTDNSENERGDSASRPSK 111
+GEKG+ G PG PG + + + ERG+ ++ K
Sbjct: 374 QGEKGEEGRPGLPG---AQGIEGPKGERGEPGNQGLK 407
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 4 GEKGDRGHPGPPGICECKP 60
GEKG G PGPPG + P
Sbjct: 620 GEKGPTGFPGPPGDSDYGP 638
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 1 KGEKGDRGHPGPPGI 45
KG +G+RG GPPGI
Sbjct: 542 KGSRGERGRVGPPGI 556
>SB_3061| Best HMM Match : Tropomodulin (HMM E-Value=0.032)
Length = 614
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 213 DVHCSRNVLAKINFVKKNFTMQKQSFWWSTFADHSLK 323
++HCS+ V+A N +K+N T++ +F S+K
Sbjct: 234 NLHCSKGVVALANALKQNTTLRVLKLEGGSFESDSVK 270
>SB_13896| Best HMM Match : bZIP_1 (HMM E-Value=3.6)
Length = 314
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 215 RALLTKRSRKNQFCKEKFYDAKTIFLVEYVCRPFLEEHV 331
R L + +R+ + C+ K+YDAK L E + EH+
Sbjct: 25 RKLRNRVNRERKSCRSKYYDAKVEHLKESKPPTWWREHI 63
>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +2
Query: 197 MKQKI*RALLTKRSRKNQFCKEKFYDAKTIFLVEYVCRP 313
+ QK+ R + ++ + + C+ KFY++K +L + C+P
Sbjct: 783 LNQKLKRLIHNRQKAERKVCRAKFYNSKVEYLKD--CKP 819
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 1 KGEKGDRGHPGPPGICECKPTDNSENERGDSASRPSK 111
+G++G RG+PG PG K T + RG S+ K
Sbjct: 149 RGQRGRRGNPGSPG---PKGTPGKDGRRGAVGSKGMK 182
>SB_30076| Best HMM Match : Collagen (HMM E-Value=8.9e-07)
Length = 198
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 1 KGEKGDRGHPGPPGICECKPTDNSENERGDSASRPSK 111
+G KGD+G G GI K + E+GD + K
Sbjct: 106 RGLKGDKGDKGDQGIQGLKGDKGDKGEKGDKGDQGLK 142
>SB_26729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +2
Query: 596 TDMVGRLPITDIYFKVNLMEKDLKISVENI 685
TDM+ LP+TD+ K++L + + K+ + ++
Sbjct: 71 TDMITNLPLTDLITKLSLTDMNTKLPLTDM 100
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 64 DNSENERGDSASRPSKTTCSNVPASDPKPQWMGENELESFKIECDEAEN 210
DN ++RG + SR + P + P E E E K+E +++ N
Sbjct: 264 DNRRDDRGRNRSRKDEDELEEEPYVEDDPDADDEKEKEKEKLEREKSSN 312
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,642,599
Number of Sequences: 59808
Number of extensions: 530855
Number of successful extensions: 2044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1966
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -