Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10544
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.76 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 49  ECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQWMGENELES 180
           +C+P + +    G++A     ++ S   ASD  P     NE E+
Sbjct: 241 KCEPLELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNEHEA 284


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 548 KNSTTEPCEYVDITMKTDMVGRLPITDIYFKVNLMEKDLKISVENI 685
           K    E C +  + +  D V  +   D+Y     M+ DLK S+  I
Sbjct: 52  KRGCIEACLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIRKI 97


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 10  KGDRGHPGPPGICECKPTDNSENERGDSASRP 105
           KGD     P G C CKP   ++ E+ +    P
Sbjct: 235 KGDGKWYLPSGGCHCKPGYQADVEKQECTECP 266


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 628 ISYRKPSDHVRLHCDIYVFTRLSSGVFLRARCRQFHTV 515
           +SY K S+   L C I++F  +    F+    R+  TV
Sbjct: 288 VSYIKASEIWFLGCTIFLFAAMVEFAFVNTIYRRKKTV 325


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +1

Query: 22   GHPGPPGICECKPTDNSENERGDSASRPSKT-TCSNVPA 135
            GH G  G     PT+ S + R  S S P +    S VP+
Sbjct: 1754 GHSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPS 1792


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 463 HGMMLQLVFILLQ 501
           H M LQ +FILLQ
Sbjct: 3   HRMWLQQIFILLQ 15


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 493 LLQNRFPLRCGT 528
           +L++ FP++CGT
Sbjct: 60  ILKDGFPIKCGT 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,907
Number of Sequences: 438
Number of extensions: 5289
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)