Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10544
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32660.1 68415.m03992 disease resistance family protein / LRR...    33   0.27 
At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    29   2.5  
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    29   2.5  
At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    29   3.3  
At1g14960.1 68414.m01787 major latex protein-related / MLP-relat...    29   3.3  
At5g58350.1 68418.m07306 protein kinase family protein contains ...    28   5.8  
At3g05380.1 68416.m00588 myb family transcription factor contain...    28   7.7  

>At2g32660.1 68415.m03992 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-4
           [Lycopersicon hirsutum] gi|2808683|emb|CAA05268
          Length = 589

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +3

Query: 363 HRLANSASQVIRIRGLDIKASSPEIIQSIVQLLTWNDVAIGFYPTS 500
           H LANS+ QV+ I     K S P    SI+ L  WN+   G  P S
Sbjct: 167 HVLANSSVQVLDIALNSFKGSFPNPPVSIINLSAWNNSFTGDIPLS 212


>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +1

Query: 13  GDRGHPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPAS 138
           G RG+P  PG C     D  E E G   S   + TC NVP S
Sbjct: 259 GYRGNPYLPGGC----IDIDECEEGKGLSSCGELTCVNVPGS 296


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +1

Query: 13  GDRGHPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPAS 138
           G RG+P  PG C     D  E E G   S   + TC NVP S
Sbjct: 296 GYRGNPYLPGGC----IDIDECEEGKGLSSCGELTCVNVPGS 333


>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
            contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 22   GHPGPPGICECKPTDNSENERGDSAS--RPSKTTCSNV 129
            G P P G  + +PT  +EN   DS +  RP+KTT  ++
Sbjct: 1084 GFPVPLGADQTEPTSETENPSRDSNANDRPNKTTVVSI 1121


>At1g14960.1 68414.m01787 major latex protein-related / MLP-related
           low similarity to major latex protein {Papaver
           somniferum}[GI:20810] contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 153

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 11  KATEDIPVPLEFASVNQQIIQRMKEEIRQ 97
           K TED P P+EF    +Q+I  M + I Q
Sbjct: 122 KRTEDSPEPIEFMKFVEQMIAHMDDHILQ 150


>At5g58350.1 68418.m07306 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 571

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 133 ASDPKPQWMGENELESFKIECDEAENMTCIA 225
           A +PKP ++ ENE+++ K+E DE      IA
Sbjct: 290 AGNPKP-FLNENEMDTLKLEDDELRTEMSIA 319


>At3g05380.1 68416.m00588 myb family transcription factor contains
           Pfam profile:PF00249 Myb-like DNA-binding domain
          Length = 1055

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 76  NERGDSASRPSKTTCSNVPASDPKPQWMGENELESFKIECDEAENMTCIAHETFSQ-KSI 252
           N+R    SR   T C +VP    +PQ  G       K+  DEA          FSQ KSI
Sbjct: 454 NKRKSKPSRLVSTDCDDVPTGKLQPQTSGSLRKRKPKVLGDEAP-------AEFSQNKSI 506

Query: 253 L*RKILRCKNNLSGGVR 303
             +++ + +NN+   V+
Sbjct: 507 NKKELPQDENNMKSLVK 523


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,349,984
Number of Sequences: 28952
Number of extensions: 373977
Number of successful extensions: 998
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)