Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10543
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 103 3e-23
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 102 6e-23
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 30 0.38
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.5
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 3.5
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.5
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 27 3.5
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 26 6.1
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 8.1
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.1
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 25 8.1
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 103 bits (247), Expect = 3e-23
Identities = 46/88 (52%), Positives = 68/88 (77%)
Frame = +3
Query: 240 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 419
F +++L E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140
Query: 420 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 503
GFT + + +KT YAQ +Q+RAIR+KM
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQKM 168
Score = 89.4 bits (212), Expect = 4e-19
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = +1
Query: 52 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 231
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 232 ERSFRK 249
E +FRK
Sbjct: 78 EHAFRK 83
Score = 73.3 bits (172), Expect = 3e-14
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = +2
Query: 509 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLME 688
+I ++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ + KL+E
Sbjct: 171 VIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLE 230
Query: 689 LHGES 703
LHGES
Sbjct: 231 LHGES 235
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 102 bits (244), Expect = 6e-23
Identities = 45/88 (51%), Positives = 67/88 (76%)
Frame = +3
Query: 240 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 419
F +++L E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140
Query: 420 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 503
GFT++ +KT YAQ +Q+RAI +KM
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQKM 168
Score = 92.3 bits (219), Expect = 6e-20
Identities = 43/66 (65%), Positives = 51/66 (77%)
Frame = +1
Query: 52 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 231
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 232 ERSFRK 249
E SFRK
Sbjct: 78 EHSFRK 83
Score = 73.3 bits (172), Expect = 3e-14
Identities = 32/65 (49%), Positives = 46/65 (70%)
Frame = +2
Query: 509 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLME 688
+I ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ + KL+E
Sbjct: 171 VIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLE 230
Query: 689 LHGES 703
LHGES
Sbjct: 231 LHGES 235
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 413 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV*IITRDVTNSELREVVNKL 562
LHW+ L+ +Q + P H+GQ S + NV + V E +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 686 PSTSRSRNGASSTLSPFGCKHRAE 615
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 258 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 389
+A Q R V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 353 LPFFNHPPELIGCEVHAVEVAEHITS 276
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 619 ARCLHPKGESVEEAPFRDLEVDGTSRRKRW 708
+RCL ++V+EA RDLE++ ++ W
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIEFSALSAFW 51
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 521 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 637
D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 392 DALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 330 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 467
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 309 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 407
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 298 KLQSTLRPCTYSAIN*ICGKTFPRQCQLVDQP 203
KL STLR Y+AIN P Q + VD P
Sbjct: 117 KLDSTLRVLDYNAINKFSIDLTPVQRKHVDMP 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,255
Number of Sequences: 5004
Number of extensions: 63145
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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